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  T3/Wheat

Genotyping experiment WorldwideDiversityPanel_9K

Description

Experiment Short NameWorldwideDiversityPanel_9K
PlatformInfinium 9K
Data ProgramUC Davis (UCD)
Breeding ProgramNational Small Grains Collection (NSG)
OPA NameWPOPA1
Processing Date04/28/2013
SoftwareIllumina Genome Studio
Software version2010.3
CommentsCavanagh CR, Chao S, Wang S, Huang BE, Stephen S, Kiani S, Forrest K, Saintenac C, Brown-Guedira GL, Akhunova A, See D, Bai G, Pumphrey M, Tomar L, Wong D, Kong S, Reynolds M, da Silva ML, Bockelman H, Talbert L, Anderson JA, Dreisigacker S, Baenziger S, Carter A, Korzun V, Morrell PL, Dubcovsky J, Morell MK, Sorrells ME, Hayden MJ, Akhunov E. Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars. Proc Natl Acad Sci U S A. 2013 110:8057-62.

6305 markers were assayed for 2259 lines.

(lines and markers)

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Removed by filteringRemaining
73 markers have a minor allele frequency (MAF) less than 5%
47 markers are missing more than 10% of data
118 markers removed
6187 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.