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Genotyping experiment TCAP90K_SpringAM_panel


Experiment Short NameSpringAMpanel
PlatformInfinium 90K
Data ProgramUSDA-ARS, North Dakota (NDG)
Breeding ProgramMontana State University (MSU)
OPA NameInfinium HD Ultra
Processing Date4/22/2013
SoftwareIllumina Genome Studio
Software version2010.3

34137 markers were assayed for 249 lines.

(lines and markers)


Removed by filteringRemaining
9746 markers have a minor allele frequency (MAF) less than 5%
428 markers are missing more than 10% of data
10072 markers removed
24065 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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