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  T3/Wheat

Genotyping experiment TCAP90K_NAMparents_panel

Description

Experiment Short NameNAMparents_panel
PlatformInfinium 90K
Data ProgramUSDA-ARS, North Dakota (NDG)
Breeding ProgramUniversity of Minnesota (UMN)
OPA NameInfinium HD Ultra
Processing Date4/22/2013
SoftwareIllumina Genome Studio
Software version2010.3
Comments

34138 markers were assayed for 60 lines.

(lines and markers)

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Removed by filteringRemaining
8251 markers have a minor allele frequency (MAF) less than 5%
446 markers are missing more than 10% of data
8631 markers removed
25507 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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