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  T3/Wheat

Genotyping experiment SynOP_GBS_2012BinMap

Description

Experiment Short NameMN_BOPA1
PlatformGBS restriction site
Data ProgramUSDA-ARS, North Dakota (NDG)
Breeding ProgramCornell University (CNL)
OPA NameBOPA1
Processing Date4/16/2010
SoftwareIllumina Genome Studio
Software version2010.3
Comments0

19753 markers were assayed for 162 lines.

(lines and markers)

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Removed by filteringRemaining
0 markers have a minor allele frequency (MAF) less than 5%
19556 markers are missing more than 10% of data
19556 markers removed
197 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)Sample_Sheet_2009plate3MN.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster FileBOPA1PooledSamples2009.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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