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Genotyping experiment SynOP_GBS_2012AntMap


Experiment Short NameMN_BOPA1
PlatformGBS restriction site
Data ProgramUSDA-ARS, North Dakota (NDG)
Breeding ProgramCornell University (CNL)
OPA NameGBS data
Processing Date2/01/2012
SoftwareCustom Script
Software versionn/a
CommentsFrom Poland, et al. PLoS one. e32252.

1485 markers were assayed for 164 lines.

(lines and markers)


Removed by filteringRemaining
0 markers have a minor allele frequency (MAF) less than 5%
64 markers are missing more than 10% of data
64 markers removed
1421 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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