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  T3/Wheat

Genotyping experiment NSGCwheat9K_4X

Description

Experiment Short NameNSGCwheat9K_4X
PlatformInfinium 9K
Data ProgramUSDA-ARS, North Dakota (NDG)
Breeding ProgramNational Small Grains Collection (NSG)
OPA Namen/a
Processing Date10/03/11
SoftwareIllumina Genome Studio
Software version2011.1
Comments

6538 markers were assayed for 546 lines.

(lines and markers)

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Removed by filteringRemaining
1035 markers have a minor allele frequency (MAF) less than 5%
140 markers are missing more than 10% of data
1141 markers removed
5397 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)wheatNSGC9K_4Xsamplesheet.csv
Manifest (markers used)PrivKSU_WheatCons_9k_11497518_A
Cluster FilewheatNSGC_9K_4Xproject.egt
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.