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Genotyping experiment HWWAMP_2013_GBS


Experiment Short NameHWWAMP_2013_GBS
PlatformGBS restriction site
Data ProgramKansas State Genotyping Lab (KSG)
Breeding ProgramKansas State University (KSM)
OPA Namen/a
Processing Date06/24/2013
SoftwarePoland Lab Pipeline
Software versionn/a

58172 markers were assayed for 288 lines.

(lines and markers)


Removed by filteringRemaining
5399 markers have a minor allele frequency (MAF) less than 5%
44774 markers are missing more than 10% of data
48006 markers removed
10166 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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