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  T3/Wheat

Genotyping experiment 2014_HapMap_GBS

Description

Experiment Short NameHapMap
PlatformGBS restriction site
Data ProgramKansas State University - Akhunov Lab (KSA)
Breeding ProgramKansas State University (KSM)
OPA Namenone
Processing Date9/26/2014
SoftwareBowtie
Software versionnone
CommentsThe data were generated by re-sequencing 62 diverse wheat lines using genotyping-by-sequencing (GBS) approach. The panel of wheat lines was selected to capture the genetic diversity of the major global wheat growing regions and included landraces and cultivars. A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes. Genome Biology 2015, 16:48

209764 markers were assayed for 58 lines.

(lines and markers)

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Removed by filteringRemaining
29566 markers have a minor allele frequency (MAF) less than 5%
159757 markers are missing more than 10% of data
166846 markers removed
42918 markers

Maximum Missing Data: %     Minimum MAF: %    



Additional files available

Samples (germplasm lines)
Manifest (markers used)GBS_filtered_SNPs.vcf
Cluster File
Raw data

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