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  T3/Wheat

Download Genotype and Phenotype Data

Download selected data for use in external analysis programs (TASSEL, rrBLUP, Flapjack, synbreed)

Phenotype and Consensus Genotype data
1. Select a set of Lines, Traits, and Trials.
2. Select a genetic map which has the best coverage for your selection.

Phenotype and Single Experiment Genotype data
1. Select a set of Lines by Genotype Experiment.
2. Select a genetic map which has the best coverage for your selection.




Phenotype Genotype consensus Genotype single experiment

Lines
none selected
Markers
All
Traits
none selected
Trials
none selected
This table lists the total markers in each map. If a marker is not in the the selected map set then it will be assigned to chromosome 0.

selectmarkers
(total)
map namecomment (mouse over item for complete text)
877Aegilops tauschii, 2009
From Luo et al, (2009) PNAS 106(37):15780-15785
19720SynOp GBS BinMap, 2012
Bin map of Synthetic W9784 x Opata M85 constructed using 19,720 GBS SNP markers. Common markers bet
1485SynOp GBS AntMap, 2012
Genetic linkage map of Synthetic W9784 x Opata M85 constructed de novo using the Antmap algorithm ma
1625KleinProteo x KleinChaja, 2012
Contacts: Jorge Dubcovsky, Luxmi Tomar.Contributors: Luxmi Tomar, Laura Pfluger, Shiaoman Chao, Deve
3503wsnp 2013 Consensus
Consensus wsnp map from C.R. Cavanaugh et. al. (2013) PNAS 110:8057-8062
3883290K Array Consensus
From: Wang et. al. (2014) Characterization of polyploid wheat genomic diversity using a high-density
145004Chromosome Survey Sequence, 2014
A physical map from the Chromosome Survey Sequence (CSS) assembled by the International Wheat Genome
125340CSS POPSEQ 2014
A genetic map created by locating the markers on the 1,397,432 contigs of the IWGSC2, Nov 2014. Cont
3393777CSS GBS 2014
A physical map of GBS markers starting with the prefix WCSS1. The Chromosome Survey Sequence (CSS) a
140682TGACv1
A physical map from from the Chromosome Survey Sequence (CSS) and CS42 libraries assembled by the Ea
Genotype Consensus - When the same line and marker is measured in multiple genotype experiments a consensus genotype is calculated using majority rule. If there is no majority then the value is set to missing.

Genotype Experiment - Genotypes measured for a set of lines and markers using a common platform (Infinium, GoldenGate, Sequenom, etc). A list of all genotype experiment and links to their description can be found in List of Genotype Experiments.

Genetic Maps - If no genetic map is selected then the marker chromosome is set to 0 and position is sequentially incremented. Markers with no map are not excluded.

Note: Genotype data for genotype experiments with over 100K markers can only be downloaded as a single experiment. Markers with no map location are assigned to chromosome 0. List of Genotype Experiments.

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.

I agree to the Data Usage Policy as specified in Toronto Statement.