Provena x CDC Boyer (2015)
Provena x 94197A1-9-2-2-5 (2015)
PepsiCo 2019
Otana x PI260616 (2015)
Ogle x TAMO-301 (2015)
Oat Consensus Map (2018)
Kanota x Ogle (2015)
IL86-6404 x Clintland 64 (2015)
IL86-1156 x Clintland 64 (2015)
Hurdal x Z-597 (2015)
Framework Oat Consensus Map (2016)
Dal x Exeter (2015)
CDC Sol-Fi x HiFi (2015)
CDC Boyer x 94197A1-9-2-2-5 (2015)
AC Assiniboia x MN841801 (2015)
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Physical
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A de-novo genetic linkage map of Provena x CDC Boyer (PB) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 874 Illumina SNPs that were applied to the RIL population of 139 PB progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate six maps that were averaged to construct a representative map with 27 LGs and genome coverage of 1613.1 cM. Babiker et al. (2015) developed the first linkage map for the PB mapping population.
A de-novo genetic linkage map of Provena x 94197A1-9-2-2-5 (PG) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 3722 markers (1480 Illumina, 2242 GBS) that were applied to the RIL population of 98 PG progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate nine maps that were averaged to construct a representative map with 33 LGs and genome coverage of 2533.6 cM. Oliver et al. (2013) developed the first linkage map for the PG mapping population.
A physical map using BLAST and the markers in T3
A de-novo genetic linkage map of Otana x PI260616 (OP) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 4376 markers (1882 Illumina, 2494 GBS) that were applied to the RIL population of 98 OP progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate seven maps that were averaged to construct a representative map with 22 LGs and genome coverage of 1873.4 cM. Oliver et al. (2013) developed the first linkage map for the OP mapping population.
A de-novo genetic linkage map of Ogle x TAMO-301 (OT) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 6603 markers (2014 Illumina, 4063 GBS, 526 Other) that were applied to the RIL population of 53 OT progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate six maps that were averaged to construct a representative map with 28 LGs and genome coverage of 2393.2 cM. Kremer et al. (2001) developed the first linkage map for the OT mapping population.
Consensus map from 4657 accessions of cultivated oat. See “Haplotype‐based genotyping‐by‐sequencing in oat genome research” Bekele et. al. January 2018. https://doi.org/10.1111/pbi.12888.
A de-novo genetic linkage map of Kanota x Ogle (KO) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 3727 markers (1652 Illumina, 1237 GBS, 838 Other) that were applied to the RIL population of 52 KO progeny. The Multipoint Package (MultiQTL Ltd.) was used to produce a linkage map with 43 LGs and genome coverage of 2774.4 cM. O’Donoughue et al. (1995) developed the first linkage map for the KO mapping population.
A de-novo genetic linkage map of IL86-6404 x Clintland 64 (IL5) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 964 Illumina SNPs that were applied to the RIL population of 171 IL5 progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate 21 maps that were averaged to construct a representative map with 25 LGs and genome coverage of 823.7 cM. Pallotta et al. (2003) developed the first linkage map for the IL5 mapping population.
A de-novo genetic linkage map of IL86-1156 x Clintland 64 (IL4) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 924 Illumina SNPs that were applied to the RIL population of 112 IL4 progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate 22 maps that were averaged to construct a representative map with 23 LGs and genome coverage of 1057.6 cM. Pallotta et al. (2003) developed the first linkage map for the IL4 mapping population.
A de-novo genetic linkage map of Hurdal x Z-597 (HZ) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 2933 markers (1432 Illumina, 1501 GBS) that were applied to the RIL population of 53 HZ progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate five maps that were averaged to construct a representative map with 23 LGs and genome coverage of 1284.8 cM. He et al. (2013) developed the first linkage map for the HZ mapping population.
Oat consensus map composed of 6K SNP array markers and PstI-MspI-GBS markers, developed by merging 12 component populations. This version of the map includes all framework markers retained during the merging of component maps from 12 bi-parental populations. See "Expanded Oat Consensus Map" for a version that contains approximate positions of additional markers. Contact: Nick Tinker or Jessica Schlueter. Reference: Chaffin et al, 2016.
A de-novo genetic linkage map of Dal x Exeter (DE) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 2346 markers (935 Illumina, 1411 GBS) that were applied to the RIL population of 145 DE progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate six maps that were averaged to construct a representative map with 25 LGs and genome coverage of 1165.7 cM. Hizbai et al. (2012) developed the first linkage map for the DE mapping population.
A de-novo genetic linkage map of CDC Sol-Fi x HiFi (CH, historically SH) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 2387 markers (1437 Illumina, 950 GBS) that were applied to the RIL population of 53 CH progeny. The Multipoint Package (MultiQTL Ltd.) was used to produce six linkage maps that were averaged to construct a representative map with 30 LGs and genome coverage of 1196.1 cM. Oliver et al. (2013) developed the first linkage map for the CH mapping population.
A de-novo genetic linkage map of CDC Boyer x 94197A1-9-2-2-5 (BG, historically GB) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 1111 Illumina SNPs that were applied to the RIL population of 76 BG progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate six maps that were averaged to construct a representative map with 23 LGs and genome coverage of 1479.6 cM. Babiker et al. (2015) developed the first linkage map for the BG mapping population.
A de-novo genetic linkage map of AC Assiniboia x MN841801 (AM) that was used in the construction of the Hexaploid Oat Consensus Map (2015). The map was developed using 1688 markers (1196 Illumina, 0 GBS, 492 Other) that were applied to the RIL population of 161 AM progeny. The MultiPoint package (MultiQTL Ltd.) was used to generate six maps that were averaged to construct a representative map with 33 LGs and genome coverage of 1652.7 cM. Lin et al. (2014) developed the first linkage map for the AM mapping population.