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  T3/Oat

Genomic Association and Prediction

Genome Wide Association (consensus genotype)
1. Select a set of lines, trait, and trials (one trait).
2. Select the genetic map which has the best coverage for this set.
3. Return to this page and select model options then GWAS Analysis
Genome Wide Association (single genotype experiment)
1. Select a set of lines by genotype experiment.
2. Select a trait and phenotype trial.
3. Select the genetic map which has the best coverage for this set.
4. Return to this page and select model options then GWAS Analysis
Genomic Prediction
1. Select a set of lines, trait, and trials (one trait).
2. Return to this page and select G-BLUP Analysis for cross-validation of the training set. Then save Training Set.
3. To select a validation set, select a new set of lines using a different trial, then return to this page for analysis.
4. To select a prediction set, select a new set of lines without phenotype measurements, then return to this page for analysis.

Additional notes on GWAS and G-BLUP methods

Select a set of traits and phenotype trials

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.