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Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment CornellMetabolomics_2014
Select link to view match in Ensembl Plant.

QueryReference Contigposition
avgbs_1014.1.1994
avgbs_10384.1.442405
avgbs_10569.1.142788
avgbs_10571.1.512826
avgbs_10752.1.22308
avgbs_10775.1.162303
avgbs_10863.1.47143
avgbs_10910.1.16130
avgbs_10913.1.51461
avgbs_11465.1.8745
avgbs_11860.1.52133
avgbs_11896.1.27669
avgbs_11915.1.47294
avgbs_12183.1.23542
avgbs_12718.1.1214
avgbs_12846.1.38420
avgbs_12893.1.161139
avgbs_13024.1.35209
avgbs_13128.1.12330
avgbs_13216.1.2775
avgbs_13243.1.35626
avgbs_13456.1.10651
avgbs_13457.1.47784
avgbs_13569.1.29766
avgbs_13693.1.41309
avgbs_1443.1.28502
avgbs_14680.1.181511
avgbs_14965.1.24585
avgbs_15186.1.57588
avgbs_15639.1.521714
avgbs_15811.1.25504
avgbs_16236.1.16311
avgbs_16817.1.10676
avgbs_16955.1.59895
avgbs_17179.1.25194
avgbs_17387.1.17510
avgbs_17530.1.26178
avgbs_18007.1.8769
avgbs_1850.1.28585
avgbs_18588.1.34183
avgbs_18636.1.23130
avgbs_18689.1.29653
avgbs_18961.1.43117
avgbs_19212.1.6389
avgbs_19492.1.37883
avgbs_19750.1.59150
avgbs_20605.1.29441
avgbs_20926.1.16618
avgbs_20984.1.64236
avgbs_21345.1.66
avgbs_21457.1.15127
avgbs_21856.1.301505
avgbs_21867.1.61648
avgbs_21892.1.31212
avgbs_22291.1.19158
avgbs_22604.1.53278
avgbs_22662.1.34527
avgbs_23027.1.42268
avgbs_23245.1.41445
avgbs_23787.1.34219
avgbs_24079.1.441727
avgbs_24099.1.16250
avgbs_25025.1.18431
avgbs_25152.1.28270
avgbs_25187.1.581271
avgbs_25192.1.34534
avgbs_25574.1.11192
avgbs_2901.1.63811
avgbs_2997.1.53375
avgbs_3066.1.401443
avgbs_3255.1.29443
avgbs_3387.1.60450
avgbs_3647.1.18529
avgbs_4390.1.40850
avgbs_4843.1.56402
avgbs_4920.1.15925
avgbs_4951.1.17354
avgbs_5003.1.33791
avgbs_5050.1.33145
avgbs_5472.1.15163
avgbs_5517.1.1734
avgbs_5639.1.60343
avgbs_5643.1.26309
avgbs_5644.1.54337
avgbs_5648.1.58341
avgbs_649.1.108
avgbs_6517.1.18337
avgbs_665.1.361494
avgbs_6K_102761.1.8985
avgbs_6K_10457.1.12230
avgbs_6K_107999.1.13143
avgbs_6K_108223.1.52459
avgbs_6K_115592.1.62263
avgbs_6K_13952.1.10200
avgbs_6K_16550.1.64279
avgbs_6K_16970.1.911
avgbs_6K_17290.1.53847
avgbs_6K_17395.1.531350
avgbs_6K_17731.1.11651
avgbs_6K_18083.1.13168
avgbs_6K_18199.1.6423
avgbs_6K_19697.1.62338
avgbs_6K_20448.1.10432
avgbs_6K_23519.1.521325
avgbs_6K_23907.1.57447
avgbs_6K_24059.1.101903
avgbs_6K_27541.1.51214
avgbs_6K_28175.1.61445
avgbs_6K_28954.1.6407
avgbs_6K_28982.1.51552
avgbs_6K_29011.1.57976
avgbs_6K_29787.1.59316
avgbs_6K_33604.1.541352
avgbs_6K_35979.1.56685
avgbs_6K_39782.1.1312
avgbs_6K_40521.1.7182
avgbs_6K_4211.1.53211
avgbs_6K_46202.1.9154
avgbs_6K_5011.1.53321
avgbs_6K_5144.1.11305
avgbs_6K_52130.1.13181
avgbs_6K_54387.1.582270
avgbs_6K_58632.1.13290
avgbs_6K_6129.1.1127
avgbs_6K_66183.1.57624
avgbs_6K_66317.1.12140
avgbs_6K_70145.1.55182
avgbs_6K_70597.1.1199
avgbs_6K_72768.1.5576
avgbs_6K_7372.1.13668
avgbs_6K_76060.1.63128
avgbs_6K_76205.1.61212
avgbs_6K_76935.1.56143
avgbs_6K_77345.1.621139
avgbs_6K_78601.1.141989
avgbs_6K_78949.1.62467
avgbs_6K_80978.1.58999
avgbs_6K_85709.1.5779
avgbs_6K_85867.1.1323
avgbs_6K_8790.1.7548
avgbs_6K_8948.1.12734
avgbs_6K_92025.1.13362
avgbs_6K_92246.1.58247
avgbs_6K_95936.1.531212
avgbs_7066.1.12534
avgbs_7257.1.42565
avgbs_7258.1.32555
avgbs_7259.1.46569
avgbs_7361.1.27478
avgbs_7383.1.3693
avgbs_7663.1.261230
avgbs_7694.1.19584
avgbs_7708.1.49331
avgbs_7838.1.46276
avgbs_7987.1.27134
avgbs_8079.1.20260
avgbs_8104.1.49391
avgbs_8125.1.44338
avgbs_8317.1.1170
avgbs_860.1.46157
avgbs_8724.1.49312
avgbs_882.1.38325
avgbs_8938.1.43428
avgbs_9095.1.4780
avgbs_9575.1.48208
avgbs_965.1.39176
avgbs_9993.1.7279
avgbs_cluster_10083.1.14336
avgbs_cluster_10117.1.46580
avgbs_cluster_10117.1.64598
avgbs_cluster_10203.1.21370
avgbs_cluster_10203.1.33382
avgbs_cluster_10203.1.55404
avgbs_cluster_10224.1.32442
avgbs_cluster_10224.1.37447
avgbs_cluster_10224.1.39449
avgbs_cluster_10317.1.4245
avgbs_cluster_10317.1.4750
avgbs_cluster_10379.1.45506
avgbs_cluster_10379.1.49510
avgbs_cluster_10411.1.26745
avgbs_cluster_10411.1.7726
avgbs_cluster_10425.1.7420
avgbs_cluster_10425.2.21434
avgbs_cluster_10720.1.453967
avgbs_cluster_10721.1.12244
avgbs_cluster_10721.1.41273
avgbs_cluster_10721.1.57289
avgbs_cluster_1077.1.591124
avgbs_cluster_10836.1.47657
avgbs_cluster_10836.1.59669
avgbs_cluster_10866.1.29262
avgbs_cluster_10945.1.55367
avgbs_cluster_11.1.10261
avgbs_cluster_11189.1.14380
avgbs_cluster_11189.1.50416
avgbs_cluster_11396.1.12347
avgbs_cluster_11478.1.2542
avgbs_cluster_11478.1.4259
avgbs_cluster_11500.2.2542
avgbs_cluster_11534.1.4259
avgbs_cluster_1187.1.32918
avgbs_cluster_1187.1.56942
avgbs_cluster_1205.1.43364
avgbs_cluster_1205.2.17338
avgbs_cluster_12109.1.1616
avgbs_cluster_12110.1.4747
avgbs_cluster_12119.1.49706
avgbs_cluster_12229.1.17624
avgbs_cluster_12229.1.63668
avgbs_cluster_12229.1.7614
avgbs_cluster_12441.1.50119
avgbs_cluster_12441.1.51120
avgbs_cluster_12534.1.34201
avgbs_cluster_12562.1.16797
avgbs_cluster_12589.1.3475
avgbs_cluster_12589.1.5697
avgbs_cluster_12672.1.54125
avgbs_cluster_127.1.37907
avgbs_cluster_127.2.62932
avgbs_cluster_12738.1.43496
avgbs_cluster_12738.1.61512
avgbs_cluster_12738.1.63512
avgbs_cluster_129.1.54593
avgbs_cluster_1290.1.13189
avgbs_cluster_1290.1.37213
avgbs_cluster_1290.1.59235
avgbs_cluster_1291.1.26276
avgbs_cluster_131.1.10171
avgbs_cluster_13115.1.60234
avgbs_cluster_13115.1.8182
avgbs_cluster_13140.1.381324
avgbs_cluster_13206.1.17605
avgbs_cluster_1344.1.561020
avgbs_cluster_1344.1.621026
avgbs_cluster_13583.1.16362
avgbs_cluster_13583.2.15361
avgbs_cluster_13583.2.49395
avgbs_cluster_13741.1.18269
avgbs_cluster_13741.1.61312
avgbs_cluster_13773.1.45922
avgbs_cluster_13773.1.46923
avgbs_cluster_13911.1.221079
avgbs_cluster_13986.1.21155
avgbs_cluster_13986.1.32166
avgbs_cluster_14155.1.24523
avgbs_cluster_14155.1.9508
avgbs_cluster_14746.1.31261
avgbs_cluster_151.1.8149
avgbs_cluster_151.2.53274
avgbs_cluster_151.2.56277
avgbs_cluster_1530.1.202462
avgbs_cluster_15316.1.22263
avgbs_cluster_15316.1.62303
avgbs_cluster_15449.1.12370
avgbs_cluster_15449.1.45403
avgbs_cluster_15449.2.12370
avgbs_cluster_15449.2.45403
avgbs_cluster_15449.2.50408
avgbs_cluster_15450.1.26195
avgbs_cluster_15450.1.54223
avgbs_cluster_15454.1.20378
avgbs_cluster_157.1.102027
avgbs_cluster_15936.1.16814
avgbs_cluster_15936.1.54852
avgbs_cluster_1597.1.1738
avgbs_cluster_1597.1.4768
avgbs_cluster_16272.1.44147
avgbs_cluster_16344.2.46359
avgbs_cluster_16359.1.12341
avgbs_cluster_165.1.59412
avgbs_cluster_16653.1.3349
avgbs_cluster_16653.1.5066
avgbs_cluster_16700.1.5054
avgbs_cluster_16700.1.5155
avgbs_cluster_16768.1.35216
avgbs_cluster_16768.1.36217
avgbs_cluster_16800.1.42245
avgbs_cluster_16811.1.29643
avgbs_cluster_1687.1.27281
avgbs_cluster_16909.1.23371
avgbs_cluster_16920.1.46624
avgbs_cluster_17.1.5867
avgbs_cluster_17041.1.2550
avgbs_cluster_17051.1.2144
avgbs_cluster_171.1.20729
avgbs_cluster_171.1.21730
avgbs_cluster_171.1.56765
avgbs_cluster_171.1.6715
avgbs_cluster_171.2.20729
avgbs_cluster_171.2.21730
avgbs_cluster_171.2.6715
avgbs_cluster_17125.1.1688
avgbs_cluster_17125.1.38110
avgbs_cluster_17125.1.44116
avgbs_cluster_1719.1.49346
avgbs_cluster_17234.1.6453
avgbs_cluster_17272.1.30874
avgbs_cluster_17272.1.63905
avgbs_cluster_17394.1.341099
avgbs_cluster_174.1.49224
avgbs_cluster_174.1.8183
avgbs_cluster_17599.1.12838
avgbs_cluster_17599.1.45871
avgbs_cluster_17669.1.20311
avgbs_cluster_178.1.64892
avgbs_cluster_17814.1.32147
avgbs_cluster_17814.1.52167
avgbs_cluster_18.1.56341
avgbs_cluster_18085.1.8627
avgbs_cluster_181.1.59814
avgbs_cluster_1827.1.15329
avgbs_cluster_18309.1.24112
avgbs_cluster_18401.1.53494
avgbs_cluster_18418.1.421957
avgbs_cluster_18462.1.10472
avgbs_cluster_18462.1.15477
avgbs_cluster_18466.1.15858
avgbs_cluster_1857.1.1679
avgbs_cluster_1857.2.1174
avgbs_cluster_1857.2.3093
avgbs_cluster_186.1.62748
avgbs_cluster_1865.1.34222
avgbs_cluster_187.1.63425
avgbs_cluster_18817.1.83291
avgbs_cluster_18935.1.161058
avgbs_cluster_1896.1.26174
avgbs_cluster_1896.1.53201
avgbs_cluster_19027.1.50136
avgbs_cluster_192.1.11289
avgbs_cluster_1925.1.1169
avgbs_cluster_1925.1.2785
avgbs_cluster_19283.1.12526
avgbs_cluster_19283.1.27541
avgbs_cluster_19308.1.45559
avgbs_cluster_19308.1.46560
avgbs_cluster_19391.1.10178
avgbs_cluster_194.1.54711
avgbs_cluster_198.1.41354
avgbs_cluster_198.1.6319
avgbs_cluster_19926.1.13153
avgbs_cluster_200.1.965
avgbs_cluster_20015.1.53464
avgbs_cluster_20015.1.56467
avgbs_cluster_20247.1.15679
avgbs_cluster_20247.1.51715
avgbs_cluster_20250.1.1245
avgbs_cluster_20355.1.36160
avgbs_cluster_20633.1.4357
avgbs_cluster_207.1.7333
avgbs_cluster_20994.1.2333
avgbs_cluster_21045.1.4176
avgbs_cluster_21045.1.6095
avgbs_cluster_21187.1.921
avgbs_cluster_21250.1.22741
avgbs_cluster_2144.1.31324
avgbs_cluster_2144.1.57350
avgbs_cluster_2144.1.59352
avgbs_cluster_22055.1.81430
avgbs_cluster_22129.1.24149
avgbs_cluster_22191.1.54134
avgbs_cluster_22224.1.22293
avgbs_cluster_22224.1.38309
avgbs_cluster_2239.1.20403
avgbs_cluster_2239.1.40423
avgbs_cluster_22394.1.21134
avgbs_cluster_22394.1.53166
avgbs_cluster_22424.1.321537
avgbs_cluster_22463.1.181234
avgbs_cluster_22463.1.311247
avgbs_cluster_22463.1.381254
avgbs_cluster_22463.1.561272
avgbs_cluster_22713.1.22577
avgbs_cluster_22831.1.62476
avgbs_cluster_22831.1.63477
avgbs_cluster_22886.1.9318
avgbs_cluster_22886.2.52361
avgbs_cluster_22886.2.9318
avgbs_cluster_22990.1.4771
avgbs_cluster_22990.1.5680
avgbs_cluster_22991.1.2939
avgbs_cluster_23005.1.5774
avgbs_cluster_23200.1.43116
avgbs_cluster_23200.1.60133
avgbs_cluster_23200.2.43116
avgbs_cluster_23200.2.60133
avgbs_cluster_23476.1.16466
avgbs_cluster_23476.1.28478
avgbs_cluster_23476.1.47497
avgbs_cluster_23520.1.30232
avgbs_cluster_23584.1.28109
avgbs_cluster_23584.1.41122
avgbs_cluster_23584.1.62143
avgbs_cluster_23677.1.371086
avgbs_cluster_23684.1.938
avgbs_cluster_23709.1.60880
avgbs_cluster_23733.1.51593
avgbs_cluster_23801.1.41642
avgbs_cluster_23801.1.53435
avgbs_cluster_23880.1.29303
avgbs_cluster_241.1.46122
avgbs_cluster_24236.1.34320
avgbs_cluster_24244.1.122117
avgbs_cluster_24303.1.29924
avgbs_cluster_24303.1.49944
avgbs_cluster_24303.1.62957
avgbs_cluster_24303.2.29924
avgbs_cluster_24303.2.49944
avgbs_cluster_24303.2.62957
avgbs_cluster_2445.1.45558
avgbs_cluster_24456.1.28861
avgbs_cluster_2470.1.15210
avgbs_cluster_2470.1.25220
avgbs_cluster_24830.1.17105
avgbs_cluster_24830.1.19107
avgbs_cluster_24830.1.23111
avgbs_cluster_24830.1.30118
avgbs_cluster_24833.1.12471
avgbs_cluster_24969.1.171200
avgbs_cluster_24969.1.271210
avgbs_cluster_24992.1.10287
avgbs_cluster_25102.1.3874
avgbs_cluster_25155.1.16278
avgbs_cluster_2518.1.47176
avgbs_cluster_25195.1.31624
avgbs_cluster_25209.1.121180
avgbs_cluster_25209.1.541222
avgbs_cluster_25286.1.61018
avgbs_cluster_25286.1.91021
avgbs_cluster_25387.1.3548
avgbs_cluster_25643.1.31595
avgbs_cluster_25643.1.35599
avgbs_cluster_25683.1.37326
avgbs_cluster_25875.1.33353
avgbs_cluster_25981.1.39104
avgbs_cluster_26008.1.9639
avgbs_cluster_26009.1.19222
avgbs_cluster_2611.1.28210
avgbs_cluster_2611.1.58240
avgbs_cluster_26259.1.1877
avgbs_cluster_26259.1.3190
avgbs_cluster_26314.1.2760
avgbs_cluster_26347.1.54235
avgbs_cluster_26375.1.37214
avgbs_cluster_26703.1.39548
avgbs_cluster_26714.1.2996
avgbs_cluster_26750.1.59660
avgbs_cluster_2690.1.14131
avgbs_cluster_2690.1.63178
avgbs_cluster_27123.1.38330
avgbs_cluster_27173.1.31166
avgbs_cluster_27173.1.32167
avgbs_cluster_27267.1.22388
avgbs_cluster_27301.1.50383
avgbs_cluster_27305.1.44860
avgbs_cluster_27305.1.50866
avgbs_cluster_27305.1.9825
avgbs_cluster_27314.1.1268
avgbs_cluster_27314.1.3389
avgbs_cluster_27314.1.54110
avgbs_cluster_27492.1.381731
avgbs_cluster_27503.1.20109
avgbs_cluster_27503.1.35124
avgbs_cluster_27588.1.181348
avgbs_cluster_27595.1.32558
avgbs_cluster_27595.1.33559
avgbs_cluster_27601.1.52769
avgbs_cluster_27652.1.34427
avgbs_cluster_27652.1.50443
avgbs_cluster_27652.1.7400
avgbs_cluster_27652.2.15408
avgbs_cluster_27652.2.34427
avgbs_cluster_27652.2.35428
avgbs_cluster_27652.2.7400
avgbs_cluster_27703.1.26407
avgbs_cluster_27703.1.61442
avgbs_cluster_27812.1.61049
avgbs_cluster_27868.1.51104
avgbs_cluster_27921.1.541033
avgbs_cluster_27924.1.42421
avgbs_cluster_27936.1.2260
avgbs_cluster_28016.1.24255
avgbs_cluster_28016.1.47278
avgbs_cluster_28028.1.7863
avgbs_cluster_28132.1.23847
avgbs_cluster_28138.1.58236
avgbs_cluster_28138.1.62240
avgbs_cluster_28264.1.19301
avgbs_cluster_28264.1.43392
avgbs_cluster_28327.1.44148
avgbs_cluster_28327.1.7111
avgbs_cluster_28372.1.50787
avgbs_cluster_28375.1.13119
avgbs_cluster_28385.1.151646
avgbs_cluster_28385.1.261657
avgbs_cluster_28426.1.46185
avgbs_cluster_28426.1.47186
avgbs_cluster_28611.1.16243
avgbs_cluster_28611.1.29256
avgbs_cluster_28669.1.37333
avgbs_cluster_28767.1.27197
avgbs_cluster_28767.1.29199
avgbs_cluster_28802.1.34227
avgbs_cluster_28802.1.37230
avgbs_cluster_29084.1.3394
avgbs_cluster_29084.1.64124
avgbs_cluster_29167.1.38306
avgbs_cluster_29430.1.43253
avgbs_cluster_29451.1.11747
avgbs_cluster_297.1.17366
avgbs_cluster_3.1.53492
avgbs_cluster_30248.1.32252
avgbs_cluster_30248.1.34254
avgbs_cluster_30319.1.25199
avgbs_cluster_30319.1.56230
avgbs_cluster_30319.1.64237
avgbs_cluster_30319.2.56230
avgbs_cluster_30319.2.64237
avgbs_cluster_30387.1.3169
avgbs_cluster_30387.1.5492
avgbs_cluster_30423.1.26579
avgbs_cluster_30423.1.27580
avgbs_cluster_3043.1.211762
avgbs_cluster_3043.1.381779
avgbs_cluster_30470.1.18655
avgbs_cluster_30645.1.14420
avgbs_cluster_30764.1.25187
avgbs_cluster_30767.1.62175
avgbs_cluster_30805.1.162128
avgbs_cluster_3082.1.111177
avgbs_cluster_30842.1.32353
avgbs_cluster_30842.2.34355
avgbs_cluster_31096.1.21238
avgbs_cluster_31112.1.14380
avgbs_cluster_31112.1.61427
avgbs_cluster_31112.2.14380
avgbs_cluster_31112.2.61427
avgbs_cluster_31171.1.26102
avgbs_cluster_31186.1.43640
avgbs_cluster_31254.1.32893
avgbs_cluster_31493.1.8133
avgbs_cluster_3156.1.50274
avgbs_cluster_3156.1.53277
avgbs_cluster_31650.1.30614
avgbs_cluster_31650.1.6590
avgbs_cluster_31687.1.50434
avgbs_cluster_31711.1.16634
avgbs_cluster_31711.1.59677
avgbs_cluster_31735.1.14310
avgbs_cluster_31789.1.35518
avgbs_cluster_31995.1.63326
avgbs_cluster_32027.1.31467
avgbs_cluster_32089.1.16320
avgbs_cluster_32089.1.51355
avgbs_cluster_32105.1.1749
avgbs_cluster_32105.1.5082
avgbs_cluster_32227.1.412370
avgbs_cluster_32251.1.56270
avgbs_cluster_3233.1.44141
avgbs_cluster_3242.1.10552
avgbs_cluster_3242.1.61603
avgbs_cluster_32480.1.412706
avgbs_cluster_32480.1.582723
avgbs_cluster_32483.1.18189
avgbs_cluster_32483.1.23194
avgbs_cluster_32508.1.26463
avgbs_cluster_32536.1.38841
avgbs_cluster_32553.1.54110
avgbs_cluster_32667.1.60162
avgbs_cluster_32725.1.34956
avgbs_cluster_32913.2.382047
avgbs_cluster_32913.2.602069
avgbs_cluster_32913.2.72016
avgbs_cluster_3298.1.391107
avgbs_cluster_3298.1.71075
avgbs_cluster_32999.1.21117
avgbs_cluster_32999.1.27123
avgbs_cluster_33086.1.26854
avgbs_cluster_33086.2.11839
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avgbs_cluster_99.2.131665

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.