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Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment Oliver_2013_CDC_SOL-FI/HIFI
Select link to view match in Ensembl Plant.

QueryReference Contigposition
GMI_DS_A3_289_88679
GMI_DS_CC10993_70216
GMI_DS_CC12000_73949
GMI_DS_CC3171_2182252
GMI_DS_CC4033_368181
GMI_DS_CC4885_61
GMI_DS_CC5128_1381849
GMI_DS_CC5684_996955
GMI_DS_CC7482_102102
GMI_DS_CC7795_77204
GMI_DS_CC8733_129689
GMI_DS_CC8923_203158
GMI_ES01_c10033_104662
GMI_ES01_c10107_481400
GMI_ES01_c11287_335323
GMI_ES01_c11420_274239
GMI_ES01_c11827_414365
GMI_ES01_c11874_1302815
GMI_ES01_c11975_3221200
GMI_ES01_c1223_2001146
GMI_ES01_c12378_433221
GMI_ES01_c12564_2102850
GMI_ES01_c1287_580285
GMI_ES01_c13113_1192147
GMI_ES01_c13391_7411352
GMI_ES01_c13403_1021450
GMI_ES01_c13432_1003056
GMI_ES01_c13657_337287
GMI_ES01_c13834_134659
GMI_ES01_c13907_1041285
GMI_ES01_c14131_1734426
GMI_ES01_c14397_365360
GMI_ES01_c14650_200487
GMI_ES01_c14673_653666
GMI_ES01_c1493_961012
GMI_ES01_c15143_210418
GMI_ES01_c1523_263193
GMI_ES01_c15825_1432669
GMI_ES01_c16239_1431247
GMI_ES01_c16275_1041501
GMI_ES01_c16302_7583772
GMI_ES01_c16437_198672
GMI_ES01_c17040_3942006
GMI_ES01_c17064_407979
GMI_ES01_c17183_318429
GMI_ES01_c17235_1441641
GMI_ES01_c1725_728605
GMI_ES01_c17319_464161
GMI_ES01_c17597_189239
GMI_ES01_c18017_440434
GMI_ES01_c19245_178274
GMI_ES01_c20367_331260
GMI_ES01_c20384_216494
GMI_ES01_c20737_408790
GMI_ES01_c21239_1901317
GMI_ES01_c24051_67503
GMI_ES01_c241_356265
GMI_ES01_c24478_2091322
GMI_ES01_c25788_216714
GMI_ES01_c25986_126319
GMI_ES01_c26328_337298
GMI_ES01_c27692_191159
GMI_ES01_c2878_533558
GMI_ES01_c3447_952137
GMI_ES01_c3759_3582406
GMI_ES01_c4452_3251277
GMI_ES01_c461_1288157
GMI_ES01_c4929_437150
GMI_ES01_c5419_407349
GMI_ES01_c5430_1793594
GMI_ES01_c5610_4341324
GMI_ES01_c6298_257241
GMI_ES01_c6499_501349
GMI_ES01_c6574_3492502
GMI_ES01_c658_925191
GMI_ES01_c677_2231036
GMI_ES01_c7872_667220
GMI_ES01_c7970_395207
GMI_ES01_c8043_192540
GMI_ES01_c8241_504341
GMI_ES01_c825_535917
GMI_ES01_c8301_93103
GMI_ES01_c8356_696852
GMI_ES01_c8552_3371694
GMI_ES01_c8716_2681691
GMI_ES01_c8777_202641
GMI_ES01_c8899_3241857
GMI_ES01_c9170_468410
GMI_ES01_c9236_115154
GMI_ES01_c9384_567637
GMI_ES01_c9396_3383374
GMI_ES01_c9472_428255
GMI_ES01_c9634_514333
GMI_ES01_lrc10014_1502700
GMI_ES01_lrc11151_273283
GMI_ES01_lrc14087_138571
GMI_ES01_lrc22461_468572
GMI_ES01_lrc22977_5951091
GMI_ES01_lrc28711_407371
GMI_ES01_lrc8208_4132297
GMI_ES01_lrc9332_388368
GMI_ES01_lrc9906_553356
GMI_ES02_c10749_342746
GMI_ES02_c10836_312483
GMI_ES02_c10841_857318
GMI_ES02_c11747_563488
GMI_ES02_c11794_636607
GMI_ES02_c11842_367259
GMI_ES02_c11855_52860
GMI_ES02_c12289_3813462
GMI_ES02_c1268_2131423
GMI_ES02_c12737_306248
GMI_ES02_c12844_488157
GMI_ES02_c13068_3281331
GMI_ES02_c13236_1781013
GMI_ES02_c13415_701804
GMI_ES02_c13726_298840
GMI_ES02_c13889_164401
GMI_ES02_c14180_257338
GMI_ES02_c14349_2584391
GMI_ES02_c14642_662102
GMI_ES02_c14927_4781847
GMI_ES02_c15089_1962492
GMI_ES02_c15462_413353
GMI_ES02_c15481_563421
GMI_ES02_c15617_183642
GMI_ES02_c15952_3482184
GMI_ES02_c16096_626479
GMI_ES02_c16344_816125
GMI_ES02_c16349_2942408
GMI_ES02_c1643_7921213
GMI_ES02_c17191_397735
GMI_ES02_c17401_684864
GMI_ES02_c17921_986226
GMI_ES02_c18066_185491
GMI_ES02_c1819_259407
GMI_ES02_c18621_282279
GMI_ES02_c1946_2241763
GMI_ES02_c19599_2451176
GMI_ES02_c19995_299238
GMI_ES02_c20191_129563
GMI_ES02_c20648_208266
GMI_ES02_c20678_948610
GMI_ES02_c21486_3951567
GMI_ES02_c22636_345269
GMI_ES02_c23736_1661010
GMI_ES02_c2449_5521122
GMI_ES02_c247_241165
GMI_ES02_c25461_2771563
GMI_ES02_c2923_535216
GMI_ES02_c3044_164358
GMI_ES02_c3181_680134
GMI_ES02_c33014_195904
GMI_ES02_c33619_381352
GMI_ES02_c349_407235
GMI_ES02_c35886_6102413
GMI_ES02_c38081_363299
GMI_ES02_c38444_270224
GMI_ES02_c38800_4181067
GMI_ES02_c4100_1210123
GMI_ES02_c4114_7602468
GMI_ES02_c4132_326750
GMI_ES02_c4268_6041671
GMI_ES02_c4756_5151721
GMI_ES02_c4957_3001031
GMI_ES02_c501_285845
GMI_ES02_c6507_5201133
GMI_ES02_c6920_143776
GMI_ES02_c7632_3641007
GMI_ES02_c7694_423443
GMI_ES02_c8186_4431819
GMI_ES02_c8277_5061573
GMI_ES02_c841_728743
GMI_ES02_c8953_2421741
GMI_ES02_c911_58010
GMI_ES02_lrc13785_4332264
GMI_ES02_lrc13788_346193
GMI_ES02_lrc18698_350145
GMI_ES02_lrc34335_153974
GMI_ES02_lrc37378_471219
GMI_ES02_lrc37952_1061343
GMI_ES15_c10106_179470
GMI_ES15_c10291_118151
GMI_ES15_c10388_464101
GMI_ES15_c11012_143501
GMI_ES15_c12378_444794
GMI_ES15_c12443_659643
GMI_ES15_c12600_230766
GMI_ES15_c1370_537102
GMI_ES15_c14129_69858
GMI_ES15_c14533_341940
GMI_ES15_c14565_407231
GMI_ES15_c15766_421746
GMI_ES15_c15790_334959
GMI_ES15_c16679_3301164
GMI_ES15_c17005_4792761
GMI_ES15_c17486_204765
GMI_ES15_c1806_90717
GMI_ES15_c19227_114669
GMI_ES15_c1951_371106
GMI_ES15_c20302_110658
GMI_ES15_c2041_605155
GMI_ES15_c2451_1651645
GMI_ES15_c2701_67829
GMI_ES15_c2709_4051582
GMI_ES15_c2822_5281409
GMI_ES15_c2968_502206
GMI_ES15_c3169_2222582
GMI_ES15_c3200_563122
GMI_ES15_c337_5081134
GMI_ES15_c349_5321278
GMI_ES15_c3706_138630
GMI_ES15_c497_4867084
GMI_ES15_c5216_593280
GMI_ES15_c5289_317754
GMI_ES15_c5368_259534
GMI_ES15_c5441_4391432
GMI_ES15_c5819_415345
GMI_ES15_c5908_278433
GMI_ES15_c5951_3644196
GMI_ES15_c6102_4421288
GMI_ES15_c6115_586345
GMI_ES15_c6153_3921228
GMI_ES15_c6167_5251429
GMI_ES15_c6193_143406
GMI_ES15_c6392_93896
GMI_ES15_c6587_2921481
GMI_ES15_c6756_354470
GMI_ES15_c6822_337143
GMI_ES15_c6979_338348
GMI_ES15_c7016_483421
GMI_ES15_c713_8481396
GMI_ES15_c7179_3882140
GMI_ES15_c7196_299393
GMI_ES15_c7706_5831601
GMI_ES15_c7819_478648
GMI_ES15_c794_171692
GMI_ES15_c8064_341261
GMI_ES15_c8238_156574
GMI_ES15_c858_5071436
GMI_ES15_c926_270462
GMI_ES15_lrc10789_2991937
GMI_ES17_c10073_640336
GMI_ES17_c10593_5081124
GMI_ES17_c1086_770281
GMI_ES17_c1115_1271092
GMI_ES17_c11262_129489
GMI_ES17_c1186_142986
GMI_ES17_c11967_3963561
GMI_ES17_c12203_326643
GMI_ES17_c12536_430530
GMI_ES17_c125_448947
GMI_ES17_c12958_2731380
GMI_ES17_c1546_405504
GMI_ES17_c15844_381262
GMI_ES17_c1620_564131
GMI_ES17_c16539_4721891
GMI_ES17_c1727_406808
GMI_ES17_c17329_384830
GMI_ES17_c17526_5071434
GMI_ES17_c17781_2685916
GMI_ES17_c1779_644177
GMI_ES17_c18155_185725
GMI_ES17_c18582_193173
GMI_ES17_c19068_5311131
GMI_ES17_c1926_571221
GMI_ES17_c20215_32447
GMI_ES17_c20752_1084114
GMI_ES17_c21168_588256
GMI_ES17_c2251_2831126
GMI_ES17_c2286_2851168
GMI_ES17_c244_1098140
GMI_ES17_c2766_159294
GMI_ES17_c2826_360661
GMI_ES17_c2941_220706
GMI_ES17_c3051_143341
GMI_ES17_c3195_6681089
GMI_ES17_c3200_273555
GMI_ES17_c3218_276261
GMI_ES17_c3271_475344
GMI_ES17_c3291_859215
GMI_ES17_c3309_961348
GMI_ES17_c3320_7862306
GMI_ES17_c3370_293452
GMI_ES17_c3418_95865
GMI_ES17_c3807_825130
GMI_ES17_c4047_1272969
GMI_ES17_c4051_3151389
GMI_ES17_c4096_846941
GMI_ES17_c4266_283268
GMI_ES17_c4268_5542529
GMI_ES17_c4295_4321701
GMI_ES17_c4663_648244
GMI_ES17_c4700_516206
GMI_ES17_c4863_2941809
GMI_ES17_c5197_5031431
GMI_ES17_c5590_702411
GMI_ES17_c5870_387685
GMI_ES17_c6857_627429
GMI_ES17_c7306_1002495
GMI_ES17_c766_770338
GMI_ES17_c786_412721
GMI_ES17_c7997_871189
GMI_ES17_c806_8491417
GMI_ES17_c8085_232925
GMI_ES17_c8182_187389
GMI_ES17_c8412_398718
GMI_ES17_c8599_6401356
GMI_ES17_c8729_764769
GMI_ES17_c882_882373
GMI_ES17_c9087_425141
GMI_ES17_c9448_286384
GMI_ES17_c9625_4191895
GMI_ES17_c969_8051455
GMI_ES17_lrc11645_145624
GMI_ES17_lrc9623_4751722
GMI_ES_CC10629_401208
GMI_ES_CC11019_290470
GMI_ES_CC11290_204481
GMI_ES_CC11621_2301533
GMI_ES_CC11826_84
GMI_ES_CC11933_314238
GMI_ES_CC11945_381398
GMI_ES_CC12765_141444
GMI_ES_CC13348_93
GMI_ES_CC13394_332557
GMI_ES_CC13854_225528
GMI_ES_CC15057_51
GMI_ES_CC16159_120429
GMI_ES_CC16445_119503
GMI_ES_CC2088_5061022
GMI_ES_CC3511_395318
GMI_ES_CC3737_371401
GMI_ES_CC4005_62
GMI_ES_CC5758_3402810
GMI_ES_CC6708_301490
GMI_ES_CC7307_489
GMI_ES_CC7312_2861007
GMI_ES_CC8351_255693
GMI_ES_CC8503_89
GMI_ES_CC8945_103770
GMI_ES_CC9711_432754
GMI_ES_CC9730_2173228

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.