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Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment Oliver_2013_PROVENA/GS-7
Select link to view match in Ensembl Plant.

QueryReference Contigposition
GMI_DS_A3_289_88679
GMI_DS_A3_37_1431125
GMI_DS_CC11787_24399
GMI_DS_CC4430_239
GMI_DS_CC4885_61
GMI_DS_CC6903_318
GMI_DS_CC7541_12236
GMI_DS_CC8041_85586
GMI_DS_CC8733_129689
GMI_DS_CC9187_14191
GMI_DS_CC9934_185513
GMI_DS_oPt-14552_1011132
GMI_DS_oPt-16541_253349
GMI_ES01_c10147_214487
GMI_ES01_c10372_6153869
GMI_ES01_c11420_274239
GMI_ES01_c11827_414365
GMI_ES01_c11874_1302815
GMI_ES01_c12117_562253
GMI_ES01_c1223_2001146
GMI_ES01_c12564_2102850
GMI_ES01_c1287_580285
GMI_ES01_c13403_1021450
GMI_ES01_c13657_337287
GMI_ES01_c13834_134659
GMI_ES01_c13907_1041285
GMI_ES01_c14065_1592402
GMI_ES01_c14084_302385
GMI_ES01_c14131_1734426
GMI_ES01_c14139_4981500
GMI_ES01_c14397_365360
GMI_ES01_c1475_450101
GMI_ES01_c15405_389146
GMI_ES01_c15628_381672
GMI_ES01_c16132_303306
GMI_ES01_c16275_1041501
GMI_ES01_c16314_308167
GMI_ES01_c16767_69548
GMI_ES01_c16774_2221063
GMI_ES01_c17040_3942006
GMI_ES01_c17064_407979
GMI_ES01_c17183_318429
GMI_ES01_c1725_728605
GMI_ES01_c18017_440434
GMI_ES01_c18122_4041077
GMI_ES01_c18839_13274
GMI_ES01_c19245_178274
GMI_ES01_c19480_5591289
GMI_ES01_c2150_256828
GMI_ES01_c22545_242301
GMI_ES01_c22619_1431178
GMI_ES01_c24656_1051673
GMI_ES01_c2481_11011408
GMI_ES01_c26749_466399
GMI_ES01_c27692_191159
GMI_ES01_c284_1036293
GMI_ES01_c2879_300348
GMI_ES01_c3132_37685
GMI_ES01_c3759_3582406
GMI_ES01_c3919_841592
GMI_ES01_c4041_4231127
GMI_ES01_c4081_1821332
GMI_ES01_c4371_166665
GMI_ES01_c4452_3251277
GMI_ES01_c4491_147477
GMI_ES01_c515_543520
GMI_ES01_c6574_3492502
GMI_ES01_c796_1801044
GMI_ES01_c7970_395207
GMI_ES01_c8301_93103
GMI_ES01_c8343_342321
GMI_ES01_c8445_691119
GMI_ES01_c8716_2681691
GMI_ES01_c9256_320264
GMI_ES01_c9384_567637
GMI_ES01_c9472_428255
GMI_ES01_c9768_1911270
GMI_ES01_c9910_1382707
GMI_ES01_lrc10967_551734
GMI_ES01_lrc11702_525456
GMI_ES01_lrc12212_4201709
GMI_ES01_lrc12590_96268
GMI_ES01_lrc22461_468572
GMI_ES01_lrc22746_3261565
GMI_ES01_lrc22977_5951091
GMI_ES01_lrc8208_4132297
GMI_ES02_c10749_342746
GMI_ES02_c10836_312483
GMI_ES02_c11747_563488
GMI_ES02_c11842_367259
GMI_ES02_c11888_2361894
GMI_ES02_c12135_181772
GMI_ES02_c12288_6951332
GMI_ES02_c12289_3813462
GMI_ES02_c12488_534297
GMI_ES02_c12621_204222
GMI_ES02_c12761_1833186
GMI_ES02_c12844_488157
GMI_ES02_c13236_1781013
GMI_ES02_c13356_599112
GMI_ES02_c13393_451452
GMI_ES02_c13415_701804
GMI_ES02_c13447_229320
GMI_ES02_c13817_3111919
GMI_ES02_c14180_257338
GMI_ES02_c14336_416618
GMI_ES02_c14497_585510
GMI_ES02_c14559_3621292
GMI_ES02_c14642_662102
GMI_ES02_c14677_4561086
GMI_ES02_c15089_1962492
GMI_ES02_c15462_413353
GMI_ES02_c15540_620797
GMI_ES02_c15617_183642
GMI_ES02_c16349_2942408
GMI_ES02_c16931_154612
GMI_ES02_c16987_268373
GMI_ES02_c17191_397735
GMI_ES02_c17364_288322
GMI_ES02_c17401_684864
GMI_ES02_c17921_986226
GMI_ES02_c18621_282279
GMI_ES02_c19005_2231497
GMI_ES02_c19974_185430
GMI_ES02_c2053_415635
GMI_ES02_c21402_611122
GMI_ES02_c22115_682632
GMI_ES02_c2281_159132
GMI_ES02_c23179_274842
GMI_ES02_c23736_1661010
GMI_ES02_c247_241165
GMI_ES02_c25461_2771563
GMI_ES02_c26223_268349
GMI_ES02_c26937_1681568
GMI_ES02_c27778_528510
GMI_ES02_c31310_407263
GMI_ES02_c3181_680134
GMI_ES02_c3374_731160
GMI_ES02_c34690_199157
GMI_ES02_c3531_401130
GMI_ES02_c37368_1761025
GMI_ES02_c38081_363299
GMI_ES02_c38444_270224
GMI_ES02_c38800_4181067
GMI_ES02_c4066_1651857
GMI_ES02_c4822_1691429
GMI_ES02_c501_285845
GMI_ES02_c5884_318383
GMI_ES02_c6784_277345
GMI_ES02_c7768_3182112
GMI_ES02_c8186_4431819
GMI_ES02_c8277_5061573
GMI_ES02_c841_728743
GMI_ES02_c8676_3602358
GMI_ES02_c884_3411056
GMI_ES02_c939_180567
GMI_ES02_lrc13446_328195
GMI_ES02_lrc13785_4332264
GMI_ES02_lrc18698_350145
GMI_ES02_lrc20576_4051061
GMI_ES02_lrc37378_471219
GMI_ES02_lrc37952_1061343
GMI_ES15_c10103_4191781
GMI_ES15_c10509_2562355
GMI_ES15_c10680_3251130
GMI_ES15_c10742_192873
GMI_ES15_c10756_401558
GMI_ES15_c10811_217459
GMI_ES15_c10866_209561
GMI_ES15_c11012_143501
GMI_ES15_c12274_1891498
GMI_ES15_c12694_287833
GMI_ES15_c1273_527347
GMI_ES15_c13888_2121144
GMI_ES15_c14129_69858
GMI_ES15_c14533_341940
GMI_ES15_c15112_3171675
GMI_ES15_c15399_80542
GMI_ES15_c15790_334959
GMI_ES15_c1630_7861349
GMI_ES15_c1697_192450
GMI_ES15_c17005_4792761
GMI_ES15_c17743_247390
GMI_ES15_c19227_114669
GMI_ES15_c20302_110658
GMI_ES15_c2041_605155
GMI_ES15_c2151_461239
GMI_ES15_c2193_426479
GMI_ES15_c2524_413468
GMI_ES15_c2709_4051582
GMI_ES15_c276_367546
GMI_ES15_c2802_625132
GMI_ES15_c285_271789
GMI_ES15_c2968_502206
GMI_ES15_c3200_563122
GMI_ES15_c337_5081134
GMI_ES15_c3688_477291
GMI_ES15_c4017_310102
GMI_ES15_c482_113670
GMI_ES15_c5289_317754
GMI_ES15_c5463_2724047
GMI_ES15_c5905_473310
GMI_ES15_c6102_4421288
GMI_ES15_c6115_586345
GMI_ES15_c6155_291537
GMI_ES15_c6167_5251429
GMI_ES15_c6435_299640
GMI_ES15_c6870_218206
GMI_ES15_c7042_524191
GMI_ES15_c713_8481396
GMI_ES15_c7179_3882140
GMI_ES15_c7272_3871008
GMI_ES15_c7722_409736
GMI_ES15_c8064_341261
GMI_ES15_c8103_525573
GMI_ES15_c8191_415266
GMI_ES15_c8227_257171
GMI_ES15_c8238_156574
GMI_ES15_c858_5071436
GMI_ES15_c8970_315414
GMI_ES15_c900_850101
GMI_ES15_c9068_311445
GMI_ES15_c9085_462293
GMI_ES15_lrc19562_6991615
GMI_ES17_c1086_770281
GMI_ES17_c1186_142986
GMI_ES17_c12316_291387
GMI_ES17_c12516_8181500
GMI_ES17_c12536_430530
GMI_ES17_c12869_484106
GMI_ES17_c13962_6001328
GMI_ES17_c14163_394434
GMI_ES17_c1546_405504
GMI_ES17_c1727_406808
GMI_ES17_c17329_384830
GMI_ES17_c17442_3341426
GMI_ES17_c17526_5071434
GMI_ES17_c18122_1801081
GMI_ES17_c18582_193173
GMI_ES17_c19062_1911286
GMI_ES17_c19385_931508
GMI_ES17_c19709_452666
GMI_ES17_c20215_32447
GMI_ES17_c2063_243611
GMI_ES17_c20752_1084114
GMI_ES17_c21168_588256
GMI_ES17_c2122_619331
GMI_ES17_c2183_9361348
GMI_ES17_c2251_2831126
GMI_ES17_c2286_2851168
GMI_ES17_c2356_160629
GMI_ES17_c244_1098140
GMI_ES17_c2651_991970
GMI_ES17_c2656_146754
GMI_ES17_c2699_4413031
GMI_ES17_c2707_866322
GMI_ES17_c2826_360661
GMI_ES17_c3051_143341
GMI_ES17_c3079_6021702
GMI_ES17_c3195_6681089
GMI_ES17_c3291_859215
GMI_ES17_c3320_7862306
GMI_ES17_c3370_293452
GMI_ES17_c3397_1672004
GMI_ES17_c3418_95865
GMI_ES17_c3486_177559
GMI_ES17_c3844_1813543
GMI_ES17_c3975_209138
GMI_ES17_c4051_3151389
GMI_ES17_c4115_637363
GMI_ES17_c4200_911227
GMI_ES17_c4266_283268
GMI_ES17_c4295_4321701
GMI_ES17_c5169_555425
GMI_ES17_c5197_5031431
GMI_ES17_c5590_702411
GMI_ES17_c5666_258457
GMI_ES17_c5832_342114
GMI_ES17_c7183_281881
GMI_ES17_c7254_313383
GMI_ES17_c7306_1002495
GMI_ES17_c7320_9092393
GMI_ES17_c7323_8313886
GMI_ES17_c7997_871189
GMI_ES17_c8066_2372692
GMI_ES17_c806_8491417
GMI_ES17_c8085_232925
GMI_ES17_c8412_398718
GMI_ES17_c882_882373
GMI_ES17_c9625_4191895
GMI_ES17_lrc11645_145624
GMI_ES_CC10109_2831503
GMI_ES_CC10629_401208
GMI_ES_CC11076_204614
GMI_ES_CC11253_3791218
GMI_ES_CC11271_65
GMI_ES_CC11290_204481
GMI_ES_CC11621_2301533
GMI_ES_CC11826_84
GMI_ES_CC12297_189492
GMI_ES_CC12360_189333
GMI_ES_CC13153_338
GMI_ES_CC13394_332557
GMI_ES_CC13970_83
GMI_ES_CC14000_280
GMI_ES_CC14178_167951
GMI_ES_CC15389_69879
GMI_ES_CC16159_120429
GMI_ES_CC16289_111448
GMI_ES_CC16445_119503
GMI_ES_CC2088_5061022
GMI_ES_CC2606_241584
GMI_ES_CC3702_2891836
GMI_ES_CC5758_3402810
GMI_ES_CC6279_474789
GMI_ES_CC6673_4601709
GMI_ES_CC6708_301490
GMI_ES_CC6818_106789
GMI_ES_CC7307_489
GMI_ES_CC7714_103631
GMI_ES_CC7894_2001172
GMI_ES_CC8351_255693
GMI_ES_CC8503_89
GMI_ES_CC8927_168495
GMI_ES_CC8945_103770
GMI_ES_CC9730_2173228

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.