Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment Oliver_2013_PROVENA/GS-7
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position
|
| GMI_DS_A3_289_88 | | 679
|
| GMI_DS_A3_37_143 | | 1125
|
| GMI_DS_CC11787_243 | | 99
|
| GMI_DS_CC4430_239 | |
|
| GMI_DS_CC4885_61 | |
|
| GMI_DS_CC6903_318 | |
|
| GMI_DS_CC7541_122 | | 36
|
| GMI_DS_CC8041_85 | | 586
|
| GMI_DS_CC8733_129 | | 689
|
| GMI_DS_CC9187_141 | | 91
|
| GMI_DS_CC9934_185 | | 513
|
| GMI_DS_oPt-14552_101 | | 1132
|
| GMI_DS_oPt-16541_253 | | 349
|
| GMI_ES01_c10147_214 | | 487
|
| GMI_ES01_c10372_615 | | 3869
|
| GMI_ES01_c11420_274 | | 239
|
| GMI_ES01_c11827_414 | | 365
|
| GMI_ES01_c11874_130 | | 2815
|
| GMI_ES01_c12117_562 | | 253
|
| GMI_ES01_c1223_200 | | 1146
|
| GMI_ES01_c12564_210 | | 2850
|
| GMI_ES01_c1287_580 | | 285
|
| GMI_ES01_c13403_102 | | 1450
|
| GMI_ES01_c13657_337 | | 287
|
| GMI_ES01_c13834_134 | | 659
|
| GMI_ES01_c13907_104 | | 1285
|
| GMI_ES01_c14065_159 | | 2402
|
| GMI_ES01_c14084_302 | | 385
|
| GMI_ES01_c14131_173 | | 4426
|
| GMI_ES01_c14139_498 | | 1500
|
| GMI_ES01_c14397_365 | | 360
|
| GMI_ES01_c1475_450 | | 101
|
| GMI_ES01_c15405_389 | | 146
|
| GMI_ES01_c15628_381 | | 672
|
| GMI_ES01_c16132_303 | | 306
|
| GMI_ES01_c16275_104 | | 1501
|
| GMI_ES01_c16314_308 | | 167
|
| GMI_ES01_c16767_69 | | 548
|
| GMI_ES01_c16774_222 | | 1063
|
| GMI_ES01_c17040_394 | | 2006
|
| GMI_ES01_c17064_407 | | 979
|
| GMI_ES01_c17183_318 | | 429
|
| GMI_ES01_c1725_728 | | 605
|
| GMI_ES01_c18017_440 | | 434
|
| GMI_ES01_c18122_404 | | 1077
|
| GMI_ES01_c18839_132 | | 74
|
| GMI_ES01_c19245_178 | | 274
|
| GMI_ES01_c19480_559 | | 1289
|
| GMI_ES01_c2150_256 | | 828
|
| GMI_ES01_c22545_242 | | 301
|
| GMI_ES01_c22619_143 | | 1178
|
| GMI_ES01_c24656_105 | | 1673
|
| GMI_ES01_c2481_1101 | | 1408
|
| GMI_ES01_c26749_466 | | 399
|
| GMI_ES01_c27692_191 | | 159
|
| GMI_ES01_c284_1036 | | 293
|
| GMI_ES01_c2879_300 | | 348
|
| GMI_ES01_c3132_376 | | 85
|
| GMI_ES01_c3759_358 | | 2406
|
| GMI_ES01_c3919_84 | | 1592
|
| GMI_ES01_c4041_423 | | 1127
|
| GMI_ES01_c4081_182 | | 1332
|
| GMI_ES01_c4371_166 | | 665
|
| GMI_ES01_c4452_325 | | 1277
|
| GMI_ES01_c4491_147 | | 477
|
| GMI_ES01_c515_543 | | 520
|
| GMI_ES01_c6574_349 | | 2502
|
| GMI_ES01_c796_180 | | 1044
|
| GMI_ES01_c7970_395 | | 207
|
| GMI_ES01_c8301_93 | | 103
|
| GMI_ES01_c8343_342 | | 321
|
| GMI_ES01_c8445_691 | | 119
|
| GMI_ES01_c8716_268 | | 1691
|
| GMI_ES01_c9256_320 | | 264
|
| GMI_ES01_c9384_567 | | 637
|
| GMI_ES01_c9472_428 | | 255
|
| GMI_ES01_c9768_191 | | 1270
|
| GMI_ES01_c9910_138 | | 2707
|
| GMI_ES01_lrc10967_551 | | 734
|
| GMI_ES01_lrc11702_525 | | 456
|
| GMI_ES01_lrc12212_420 | | 1709
|
| GMI_ES01_lrc12590_96 | | 268
|
| GMI_ES01_lrc22461_468 | | 572
|
| GMI_ES01_lrc22746_326 | | 1565
|
| GMI_ES01_lrc22977_595 | | 1091
|
| GMI_ES01_lrc8208_413 | | 2297
|
| GMI_ES02_c10749_342 | | 746
|
| GMI_ES02_c10836_312 | | 483
|
| GMI_ES02_c11747_563 | | 488
|
| GMI_ES02_c11842_367 | | 259
|
| GMI_ES02_c11888_236 | | 1894
|
| GMI_ES02_c12135_181 | | 772
|
| GMI_ES02_c12288_695 | | 1332
|
| GMI_ES02_c12289_381 | | 3462
|
| GMI_ES02_c12488_534 | | 297
|
| GMI_ES02_c12621_204 | | 222
|
| GMI_ES02_c12761_183 | | 3186
|
| GMI_ES02_c12844_488 | | 157
|
| GMI_ES02_c13236_178 | | 1013
|
| GMI_ES02_c13356_599 | | 112
|
| GMI_ES02_c13393_451 | | 452
|
| GMI_ES02_c13415_701 | | 804
|
| GMI_ES02_c13447_229 | | 320
|
| GMI_ES02_c13817_311 | | 1919
|
| GMI_ES02_c14180_257 | | 338
|
| GMI_ES02_c14336_416 | | 618
|
| GMI_ES02_c14497_585 | | 510
|
| GMI_ES02_c14559_362 | | 1292
|
| GMI_ES02_c14642_662 | | 102
|
| GMI_ES02_c14677_456 | | 1086
|
| GMI_ES02_c15089_196 | | 2492
|
| GMI_ES02_c15462_413 | | 353
|
| GMI_ES02_c15540_620 | | 797
|
| GMI_ES02_c15617_183 | | 642
|
| GMI_ES02_c16349_294 | | 2408
|
| GMI_ES02_c16931_154 | | 612
|
| GMI_ES02_c16987_268 | | 373
|
| GMI_ES02_c17191_397 | | 735
|
| GMI_ES02_c17364_288 | | 322
|
| GMI_ES02_c17401_684 | | 864
|
| GMI_ES02_c17921_986 | | 226
|
| GMI_ES02_c18621_282 | | 279
|
| GMI_ES02_c19005_223 | | 1497
|
| GMI_ES02_c19974_185 | | 430
|
| GMI_ES02_c2053_415 | | 635
|
| GMI_ES02_c21402_61 | | 1122
|
| GMI_ES02_c22115_682 | | 632
|
| GMI_ES02_c2281_159 | | 132
|
| GMI_ES02_c23179_274 | | 842
|
| GMI_ES02_c23736_166 | | 1010
|
| GMI_ES02_c247_241 | | 165
|
| GMI_ES02_c25461_277 | | 1563
|
| GMI_ES02_c26223_268 | | 349
|
| GMI_ES02_c26937_168 | | 1568
|
| GMI_ES02_c27778_528 | | 510
|
| GMI_ES02_c31310_407 | | 263
|
| GMI_ES02_c3181_680 | | 134
|
| GMI_ES02_c3374_73 | | 1160
|
| GMI_ES02_c34690_199 | | 157
|
| GMI_ES02_c3531_401 | | 130
|
| GMI_ES02_c37368_176 | | 1025
|
| GMI_ES02_c38081_363 | | 299
|
| GMI_ES02_c38444_270 | | 224
|
| GMI_ES02_c38800_418 | | 1067
|
| GMI_ES02_c4066_165 | | 1857
|
| GMI_ES02_c4822_169 | | 1429
|
| GMI_ES02_c501_285 | | 845
|
| GMI_ES02_c5884_318 | | 383
|
| GMI_ES02_c6784_277 | | 345
|
| GMI_ES02_c7768_318 | | 2112
|
| GMI_ES02_c8186_443 | | 1819
|
| GMI_ES02_c8277_506 | | 1573
|
| GMI_ES02_c841_728 | | 743
|
| GMI_ES02_c8676_360 | | 2358
|
| GMI_ES02_c884_341 | | 1056
|
| GMI_ES02_c939_180 | | 567
|
| GMI_ES02_lrc13446_328 | | 195
|
| GMI_ES02_lrc13785_433 | | 2264
|
| GMI_ES02_lrc18698_350 | | 145
|
| GMI_ES02_lrc20576_405 | | 1061
|
| GMI_ES02_lrc37378_471 | | 219
|
| GMI_ES02_lrc37952_106 | | 1343
|
| GMI_ES15_c10103_419 | | 1781
|
| GMI_ES15_c10509_256 | | 2355
|
| GMI_ES15_c10680_325 | | 1130
|
| GMI_ES15_c10742_192 | | 873
|
| GMI_ES15_c10756_401 | | 558
|
| GMI_ES15_c10811_217 | | 459
|
| GMI_ES15_c10866_209 | | 561
|
| GMI_ES15_c11012_143 | | 501
|
| GMI_ES15_c12274_189 | | 1498
|
| GMI_ES15_c12694_287 | | 833
|
| GMI_ES15_c1273_527 | | 347
|
| GMI_ES15_c13888_212 | | 1144
|
| GMI_ES15_c14129_69 | | 858
|
| GMI_ES15_c14533_341 | | 940
|
| GMI_ES15_c15112_317 | | 1675
|
| GMI_ES15_c15399_80 | | 542
|
| GMI_ES15_c15790_334 | | 959
|
| GMI_ES15_c1630_786 | | 1349
|
| GMI_ES15_c1697_192 | | 450
|
| GMI_ES15_c17005_479 | | 2761
|
| GMI_ES15_c17743_247 | | 390
|
| GMI_ES15_c19227_114 | | 669
|
| GMI_ES15_c20302_110 | | 658
|
| GMI_ES15_c2041_605 | | 155
|
| GMI_ES15_c2151_461 | | 239
|
| GMI_ES15_c2193_426 | | 479
|
| GMI_ES15_c2524_413 | | 468
|
| GMI_ES15_c2709_405 | | 1582
|
| GMI_ES15_c276_367 | | 546
|
| GMI_ES15_c2802_625 | | 132
|
| GMI_ES15_c285_271 | | 789
|
| GMI_ES15_c2968_502 | | 206
|
| GMI_ES15_c3200_563 | | 122
|
| GMI_ES15_c337_508 | | 1134
|
| GMI_ES15_c3688_477 | | 291
|
| GMI_ES15_c4017_310 | | 102
|
| GMI_ES15_c482_113 | | 670
|
| GMI_ES15_c5289_317 | | 754
|
| GMI_ES15_c5463_272 | | 4047
|
| GMI_ES15_c5905_473 | | 310
|
| GMI_ES15_c6102_442 | | 1288
|
| GMI_ES15_c6115_586 | | 345
|
| GMI_ES15_c6155_291 | | 537
|
| GMI_ES15_c6167_525 | | 1429
|
| GMI_ES15_c6435_299 | | 640
|
| GMI_ES15_c6870_218 | | 206
|
| GMI_ES15_c7042_524 | | 191
|
| GMI_ES15_c713_848 | | 1396
|
| GMI_ES15_c7179_388 | | 2140
|
| GMI_ES15_c7272_387 | | 1008
|
| GMI_ES15_c7722_409 | | 736
|
| GMI_ES15_c8064_341 | | 261
|
| GMI_ES15_c8103_525 | | 573
|
| GMI_ES15_c8191_415 | | 266
|
| GMI_ES15_c8227_257 | | 171
|
| GMI_ES15_c8238_156 | | 574
|
| GMI_ES15_c858_507 | | 1436
|
| GMI_ES15_c8970_315 | | 414
|
| GMI_ES15_c900_850 | | 101
|
| GMI_ES15_c9068_311 | | 445
|
| GMI_ES15_c9085_462 | | 293
|
| GMI_ES15_lrc19562_699 | | 1615
|
| GMI_ES17_c1086_770 | | 281
|
| GMI_ES17_c1186_142 | | 986
|
| GMI_ES17_c12316_291 | | 387
|
| GMI_ES17_c12516_818 | | 1500
|
| GMI_ES17_c12536_430 | | 530
|
| GMI_ES17_c12869_484 | | 106
|
| GMI_ES17_c13962_600 | | 1328
|
| GMI_ES17_c14163_394 | | 434
|
| GMI_ES17_c1546_405 | | 504
|
| GMI_ES17_c1727_406 | | 808
|
| GMI_ES17_c17329_384 | | 830
|
| GMI_ES17_c17442_334 | | 1426
|
| GMI_ES17_c17526_507 | | 1434
|
| GMI_ES17_c18122_180 | | 1081
|
| GMI_ES17_c18582_193 | | 173
|
| GMI_ES17_c19062_191 | | 1286
|
| GMI_ES17_c19385_93 | | 1508
|
| GMI_ES17_c19709_452 | | 666
|
| GMI_ES17_c20215_324 | | 47
|
| GMI_ES17_c2063_243 | | 611
|
| GMI_ES17_c20752_1084 | | 114
|
| GMI_ES17_c21168_588 | | 256
|
| GMI_ES17_c2122_619 | | 331
|
| GMI_ES17_c2183_936 | | 1348
|
| GMI_ES17_c2251_283 | | 1126
|
| GMI_ES17_c2286_285 | | 1168
|
| GMI_ES17_c2356_160 | | 629
|
| GMI_ES17_c244_1098 | | 140
|
| GMI_ES17_c2651_991 | | 970
|
| GMI_ES17_c2656_146 | | 754
|
| GMI_ES17_c2699_441 | | 3031
|
| GMI_ES17_c2707_866 | | 322
|
| GMI_ES17_c2826_360 | | 661
|
| GMI_ES17_c3051_143 | | 341
|
| GMI_ES17_c3079_602 | | 1702
|
| GMI_ES17_c3195_668 | | 1089
|
| GMI_ES17_c3291_859 | | 215
|
| GMI_ES17_c3320_786 | | 2306
|
| GMI_ES17_c3370_293 | | 452
|
| GMI_ES17_c3397_167 | | 2004
|
| GMI_ES17_c3418_95 | | 865
|
| GMI_ES17_c3486_177 | | 559
|
| GMI_ES17_c3844_181 | | 3543
|
| GMI_ES17_c3975_209 | | 138
|
| GMI_ES17_c4051_315 | | 1389
|
| GMI_ES17_c4115_637 | | 363
|
| GMI_ES17_c4200_911 | | 227
|
| GMI_ES17_c4266_283 | | 268
|
| GMI_ES17_c4295_432 | | 1701
|
| GMI_ES17_c5169_555 | | 425
|
| GMI_ES17_c5197_503 | | 1431
|
| GMI_ES17_c5590_702 | | 411
|
| GMI_ES17_c5666_258 | | 457
|
| GMI_ES17_c5832_342 | | 114
|
| GMI_ES17_c7183_281 | | 881
|
| GMI_ES17_c7254_313 | | 383
|
| GMI_ES17_c7306_1002 | | 495
|
| GMI_ES17_c7320_909 | | 2393
|
| GMI_ES17_c7323_831 | | 3886
|
| GMI_ES17_c7997_871 | | 189
|
| GMI_ES17_c8066_237 | | 2692
|
| GMI_ES17_c806_849 | | 1417
|
| GMI_ES17_c8085_232 | | 925
|
| GMI_ES17_c8412_398 | | 718
|
| GMI_ES17_c882_882 | | 373
|
| GMI_ES17_c9625_419 | | 1895
|
| GMI_ES17_lrc11645_145 | | 624
|
| GMI_ES_CC10109_283 | | 1503
|
| GMI_ES_CC10629_401 | | 208
|
| GMI_ES_CC11076_204 | | 614
|
| GMI_ES_CC11253_379 | | 1218
|
| GMI_ES_CC11271_65 | |
|
| GMI_ES_CC11290_204 | | 481
|
| GMI_ES_CC11621_230 | | 1533
|
| GMI_ES_CC11826_84 | |
|
| GMI_ES_CC12297_189 | | 492
|
| GMI_ES_CC12360_189 | | 333
|
| GMI_ES_CC13153_338 | |
|
| GMI_ES_CC13394_332 | | 557
|
| GMI_ES_CC13970_83 | |
|
| GMI_ES_CC14000_280 | |
|
| GMI_ES_CC14178_167 | | 951
|
| GMI_ES_CC15389_69 | | 879
|
| GMI_ES_CC16159_120 | | 429
|
| GMI_ES_CC16289_111 | | 448
|
| GMI_ES_CC16445_119 | | 503
|
| GMI_ES_CC2088_506 | | 1022
|
| GMI_ES_CC2606_241 | | 584
|
| GMI_ES_CC3702_289 | | 1836
|
| GMI_ES_CC5758_340 | | 2810
|
| GMI_ES_CC6279_474 | | 789
|
| GMI_ES_CC6673_460 | | 1709
|
| GMI_ES_CC6708_301 | | 490
|
| GMI_ES_CC6818_106 | | 789
|
| GMI_ES_CC7307_489 | |
|
| GMI_ES_CC7714_103 | | 631
|
| GMI_ES_CC7894_200 | | 1172
|
| GMI_ES_CC8351_255 | | 693
|
| GMI_ES_CC8503_89 | |
|
| GMI_ES_CC8927_168 | | 495
|
| GMI_ES_CC8945_103 | | 770
|
| GMI_ES_CC9730_217 | | 3228
|