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  T3/Oat

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment Oliver_2013_OGLE/TAMO301
Select link to view match in Ensembl Plant.

QueryReference Contigposition
GMI_DS_CC11029_65741
GMI_DS_CC3171_218471
GMI_DS_CC9934_185570
GMI_DS_oPt-17047_370128
GMI_ES01_c10033_104440
GMI_ES01_c10107_4811116
GMI_ES01_c109_982692
GMI_ES01_c11126_277275
GMI_ES01_c11287_335331
GMI_ES01_c11420_27461
GMI_ES01_c11741_1821515
GMI_ES01_c11827_414795
GMI_ES01_c11874_1302572
GMI_ES01_c11895_354283
GMI_ES01_c11917_356179
GMI_ES01_c12117_562459
GMI_ES01_c12378_433177
GMI_ES01_c1287_5801850
GMI_ES01_c1307_465114
GMI_ES01_c13113_119777
GMI_ES01_c13391_7411433
GMI_ES01_c13403_10272
GMI_ES01_c13467_2331145
GMI_ES01_c13663_212272
GMI_ES01_c13834_134149
GMI_ES01_c13907_104110
GMI_ES01_c1394_726220
GMI_ES01_c14001_2997
GMI_ES01_c14065_1592423
GMI_ES01_c14131_173215
GMI_ES01_c14139_4981465
GMI_ES01_c14349_357174
GMI_ES01_c14397_365555
GMI_ES01_c14650_200524
GMI_ES01_c1475_4501443
GMI_ES01_c1493_96560
GMI_ES01_c1511_101581
GMI_ES01_c15143_210222
GMI_ES01_c15158_404518
GMI_ES01_c15405_389153
GMI_ES01_c16239_1431469
GMI_ES01_c16275_104578
GMI_ES01_c16302_758194
GMI_ES01_c1635_353149
GMI_ES01_c16437_198500
GMI_ES01_c16774_222921
GMI_ES01_c17064_407475
GMI_ES01_c17183_318329
GMI_ES01_c1725_728755
GMI_ES01_c17319_464184
GMI_ES01_c17486_304472
GMI_ES01_c18017_44093
GMI_ES01_c18122_4041094
GMI_ES01_c18839_1322044
GMI_ES01_c19245_178254
GMI_ES01_c19480_559290
GMI_ES01_c2010_173466
GMI_ES01_c20737_4081390
GMI_ES01_c21239_190318
GMI_ES01_c2150_256767
GMI_ES01_c21700_173425
GMI_ES01_c22998_155150
GMI_ES01_c2320_569210
GMI_ES01_c2338_2131055
GMI_ES01_c233_61205
GMI_ES01_c24051_67431
GMI_ES01_c24109_264366
GMI_ES01_c241_356246
GMI_ES01_c24478_209182
GMI_ES01_c24656_105130
GMI_ES01_c24681_389207
GMI_ES01_c24758_3941200
GMI_ES01_c25788_21650
GMI_ES01_c25884_1812496
GMI_ES01_c27869_5121810
GMI_ES01_c27945_487102
GMI_ES01_c2827_649214
GMI_ES01_c284_10361391
GMI_ES01_c2878_533574
GMI_ES01_c2879_3001349
GMI_ES01_c30278_240280
GMI_ES01_c30497_105650
GMI_ES01_c3298_2261237
GMI_ES01_c3302_1781401
GMI_ES01_c3327_1801473
GMI_ES01_c3397_48021
GMI_ES01_c3447_9521811
GMI_ES01_c3759_358321
GMI_ES01_c3899_470164
GMI_ES01_c3919_8461
GMI_ES01_c4081_182142
GMI_ES01_c4288_461972
GMI_ES01_c4371_166186
GMI_ES01_c4452_3251728
GMI_ES01_c4929_437182
GMI_ES01_c5111_454190
GMI_ES01_c515_543110
GMI_ES01_c5419_4071437
GMI_ES01_c5610_434416
GMI_ES01_c5633_477313
GMI_ES01_c6499_501493
GMI_ES01_c6574_3491563
GMI_ES01_c658_92547
GMI_ES01_c677_223545
GMI_ES01_c791_1072130
GMI_ES01_c7940_496431
GMI_ES01_c8015_409204
GMI_ES01_c8043_1921190
GMI_ES01_c8241_504266
GMI_ES01_c8356_696800
GMI_ES01_c8470_599374
GMI_ES01_c8527_3201036
GMI_ES01_c8552_3371150
GMI_ES01_c8777_202405
GMI_ES01_c8788_18289
GMI_ES01_c8899_324950
GMI_ES01_c9044_416937
GMI_ES01_c9159_455403
GMI_ES01_c9170_468237
GMI_ES01_c9241_407428
GMI_ES01_c9256_320897
GMI_ES01_c9384_56767
GMI_ES01_c9396_338711
GMI_ES01_c9472_42867
GMI_ES01_c9544_263703
GMI_ES01_c9768_191340
GMI_ES01_lrc10725_434166
GMI_ES01_lrc10967_551597
GMI_ES01_lrc11702_525273
GMI_ES01_lrc12212_420281
GMI_ES01_lrc12590_96869
GMI_ES01_lrc12621_103548
GMI_ES01_lrc13031_95144
GMI_ES01_lrc22977_5951002
GMI_ES01_lrc28711_407288
GMI_ES01_lrc28828_382480
GMI_ES01_lrc29552_212393
GMI_ES01_lrc7807_649272
GMI_ES01_lrc8457_64235
GMI_ES01_lrc9906_553360
GMI_ES02_c10374_390167
GMI_ES02_c10836_312116
GMI_ES02_c10841_857832
GMI_ES02_c11747_563491
GMI_ES02_c11794_6361234
GMI_ES02_c11913_356273
GMI_ES02_c12135_1811777
GMI_ES02_c12598_2601394
GMI_ES02_c12721_577103
GMI_ES02_c12761_183347
GMI_ES02_c12942_675748
GMI_ES02_c13068_32846
GMI_ES02_c13135_752131
GMI_ES02_c13236_178206
GMI_ES02_c13356_5991069
GMI_ES02_c13415_701932
GMI_ES02_c13433_326198
GMI_ES02_c13596_178123
GMI_ES02_c13712_383229
GMI_ES02_c13726_298780
GMI_ES02_c13817_311206
GMI_ES02_c13889_164424
GMI_ES02_c14180_257322
GMI_ES02_c14254_241164
GMI_ES02_c14336_416612
GMI_ES02_c14349_258101
GMI_ES02_c14559_362414
GMI_ES02_c14642_662683
GMI_ES02_c14927_4781808
GMI_ES02_c15089_196152
GMI_ES02_c15112_271316
GMI_ES02_c1538_477444
GMI_ES02_c15462_413308
GMI_ES02_c15540_620421
GMI_ES02_c15652_109386
GMI_ES02_c15682_295173
GMI_ES02_c15952_348485
GMI_ES02_c16096_626685
GMI_ES02_c16266_250469
GMI_ES02_c16349_294969
GMI_ES02_c1643_792431
GMI_ES02_c16931_154555
GMI_ES02_c17921_986179
GMI_ES02_c1819_259226
GMI_ES02_c18291_345109
GMI_ES02_c18621_282182
GMI_ES02_c19005_223317
GMI_ES02_c19419_304718
GMI_ES02_c1946_224879
GMI_ES02_c19974_18544
GMI_ES02_c20191_129167
GMI_ES02_c2053_415432
GMI_ES02_c20648_208219
GMI_ES02_c20678_948348
GMI_ES02_c21402_61592
GMI_ES02_c21486_395356
GMI_ES02_c22225_492215
GMI_ES02_c2281_1591016
GMI_ES02_c23066_496484
GMI_ES02_c23179_27416
GMI_ES02_c23736_166538
GMI_ES02_c2449_552259
GMI_ES02_c247_241293
GMI_ES02_c25461_2771376
GMI_ES02_c2554_426936
GMI_ES02_c26223_2684353
GMI_ES02_c28204_2551202
GMI_ES02_c28827_474851
GMI_ES02_c28832_308421
GMI_ES02_c2923_535197
GMI_ES02_c2959_310411
GMI_ES02_c2961_257344
GMI_ES02_c2988_293351
GMI_ES02_c3044_164244
GMI_ES02_c31310_4071043
GMI_ES02_c3181_680135
GMI_ES02_c31937_212552
GMI_ES02_c3206_2931325
GMI_ES02_c3243_375356
GMI_ES02_c33014_195466
GMI_ES02_c34691_2361196
GMI_ES02_c349_407431
GMI_ES02_c35031_175963
GMI_ES02_c3577_672348
GMI_ES02_c35886_6102434
GMI_ES02_c37525_294600
GMI_ES02_c38081_363324
GMI_ES02_c38199_3671250
GMI_ES02_c38444_270101
GMI_ES02_c38800_418617
GMI_ES02_c38960_346748
GMI_ES02_c4066_1651228
GMI_ES02_c4080_192225
GMI_ES02_c4091_462305
GMI_ES02_c4100_1210101
GMI_ES02_c4114_760556
GMI_ES02_c4132_3261020
GMI_ES02_c4268_6041712
GMI_ES02_c4277_710185
GMI_ES02_c4496_157476
GMI_ES02_c4509_295185
GMI_ES02_c4655_137683
GMI_ES02_c4822_1691136
GMI_ES02_c4957_300921
GMI_ES02_c5098_397630
GMI_ES02_c6122_167560
GMI_ES02_c6368_605401
GMI_ES02_c6762_3081683
GMI_ES02_c6784_277341
GMI_ES02_c7238_473197
GMI_ES02_c7694_423427
GMI_ES02_c8034_282159
GMI_ES02_c8186_44391
GMI_ES02_c8277_506465
GMI_ES02_c841_7281840
GMI_ES02_c8676_360714
GMI_ES02_c8845_199186
GMI_ES02_c8953_242470
GMI_ES02_c933_584109
GMI_ES02_c975_340374
GMI_ES02_c9794_269459
GMI_ES02_lrc13446_328544
GMI_ES02_lrc17781_234166
GMI_ES02_lrc23878_108528
GMI_ES02_lrc34335_1531227
GMI_ES02_lrc37378_471229
GMI_ES02_lrc37952_106603
GMI_ES15_c10680_325745
GMI_ES15_c1114_170983
GMI_ES15_c112_6241060
GMI_ES15_c12108_368339
GMI_ES15_c12274_189463
GMI_ES15_c12355_287318
GMI_ES15_c12378_444413
GMI_ES15_c12443_659559
GMI_ES15_c1273_527331
GMI_ES15_c13434_347284
GMI_ES15_c13526_397211
GMI_ES15_c13888_2121083
GMI_ES15_c14533_341585
GMI_ES15_c14817_204232
GMI_ES15_c15112_317278
GMI_ES15_c15451_369348
GMI_ES15_c15790_334302
GMI_ES15_c1630_786154
GMI_ES15_c17486_204531
GMI_ES15_c17743_247690
GMI_ES15_c17765_180846
GMI_ES15_c1806_90744
GMI_ES15_c1855_452236
GMI_ES15_c19227_114606
GMI_ES15_c20302_110541
GMI_ES15_c2046_330532
GMI_ES15_c2193_4262017
GMI_ES15_c2709_405300
GMI_ES15_c2822_528160
GMI_ES15_c2877_179806
GMI_ES15_c3159_412503
GMI_ES15_c3169_2222433
GMI_ES15_c3200_563562
GMI_ES15_c3296_5211408
GMI_ES15_c3362_5061193
GMI_ES15_c349_532272
GMI_ES15_c3806_357302
GMI_ES15_c4463_5081975
GMI_ES15_c4667_4811822
GMI_ES15_c482_113270
GMI_ES15_c497_486684
GMI_ES15_c5216_593443
GMI_ES15_c5280_161124
GMI_ES15_c5289_317287
GMI_ES15_c5315_156406
GMI_ES15_c5368_259942
GMI_ES15_c5441_43963
GMI_ES15_c5451_344295
GMI_ES15_c5554_37764
GMI_ES15_c5819_4152646
GMI_ES15_c5908_278784
GMI_ES15_c5920_245241
GMI_ES15_c5951_3642812
GMI_ES15_c605_6381653
GMI_ES15_c6102_44290
GMI_ES15_c6115_5861326
GMI_ES15_c6167_5251321
GMI_ES15_c6191_370939
GMI_ES15_c6341_2771481
GMI_ES15_c6392_93892
GMI_ES15_c6587_2921357
GMI_ES15_c6652_253412
GMI_ES15_c6756_354216
GMI_ES15_c6822_337310
GMI_ES15_c6870_218198
GMI_ES15_c6914_6631579
GMI_ES15_c6921_451867
GMI_ES15_c6979_33884
GMI_ES15_c7016_483629
GMI_ES15_c7179_388547
GMI_ES15_c7196_299364
GMI_ES15_c7272_387198
GMI_ES15_c7722_409405
GMI_ES15_c7819_478183
GMI_ES15_c794_171714
GMI_ES15_c8064_341995
GMI_ES15_c8238_156664
GMI_ES15_c858_5071466
GMI_ES15_c8836_3132180
GMI_ES15_c926_270461
GMI_ES15_c9419_304372
GMI_ES15_lrc10789_299137
GMI_ES15_lrc12312_503428
GMI_ES15_lrc19149_996
GMI_ES15_lrc19345_536268
GMI_ES17_c10035_695129
GMI_ES17_c10073_640319
GMI_ES17_c10388_39476
GMI_ES17_c1086_770304
GMI_ES17_c10921_231986
GMI_ES17_c1115_127643
GMI_ES17_c11186_5551765
GMI_ES17_c11262_129292
GMI_ES17_c1186_1421036
GMI_ES17_c11967_3961227
GMI_ES17_c1205_2131716
GMI_ES17_c12067_507518
GMI_ES17_c12269_176457
GMI_ES17_c12536_430712
GMI_ES17_c12958_273804
GMI_ES17_c1365_216930
GMI_ES17_c13885_313367
GMI_ES17_c13962_600236
GMI_ES17_c15844_381457
GMI_ES17_c1618_519298
GMI_ES17_c16539_4721585
GMI_ES17_c17467_410316
GMI_ES17_c17538_273464
GMI_ES17_c17781_268246
GMI_ES17_c18582_193190
GMI_ES17_c18688_449268
GMI_ES17_c19062_1911229
GMI_ES17_c197_1141364
GMI_ES17_c2063_243304
GMI_ES17_c20652_599441
GMI_ES17_c20660_396676
GMI_ES17_c21168_588606
GMI_ES17_c2183_93655
GMI_ES17_c2251_28361
GMI_ES17_c2286_285532
GMI_ES17_c2308_1026158
GMI_ES17_c2356_160572
GMI_ES17_c244_10981724
GMI_ES17_c2454_883409
GMI_ES17_c2598_3252048
GMI_ES17_c2651_991101
GMI_ES17_c2656_146436
GMI_ES17_c2699_441101
GMI_ES17_c2707_866316
GMI_ES17_c2766_159145
GMI_ES17_c2767_643675
GMI_ES17_c2826_360718
GMI_ES17_c2941_220592
GMI_ES17_c2976_706275
GMI_ES17_c3038_487460
GMI_ES17_c3051_143691
GMI_ES17_c3079_602452
GMI_ES17_c3200_2731541
GMI_ES17_c3218_276583
GMI_ES17_c3271_4751216
GMI_ES17_c3291_8592115
GMI_ES17_c3309_96790
GMI_ES17_c3320_78679
GMI_ES17_c3397_167416
GMI_ES17_c3693_421367
GMI_ES17_c3807_8251278
GMI_ES17_c3844_181626
GMI_ES17_c3846_396101
GMI_ES17_c3969_6003228
GMI_ES17_c4241_356988
GMI_ES17_c4266_283622
GMI_ES17_c4268_5542192
GMI_ES17_c4295_4321313
GMI_ES17_c4498_2221051
GMI_ES17_c4515_297497
GMI_ES17_c4663_6481139
GMI_ES17_c4730_358495
GMI_ES17_c4863_294446
GMI_ES17_c5197_503351
GMI_ES17_c528_116129
GMI_ES17_c5346_548311
GMI_ES17_c5367_259833
GMI_ES17_c5637_1521228
GMI_ES17_c5666_258431
GMI_ES17_c5744_6892148
GMI_ES17_c5784_752436
GMI_ES17_c5832_342224
GMI_ES17_c5870_387195
GMI_ES17_c6299_27293
GMI_ES17_c655_8911053
GMI_ES17_c6857_627506
GMI_ES17_c7183_2812468
GMI_ES17_c7306_1002159
GMI_ES17_c7323_8312832
GMI_ES17_c7355_434136
GMI_ES17_c7387_367183
GMI_ES17_c766_7701069
GMI_ES17_c786_412144
GMI_ES17_c7967_247477
GMI_ES17_c8066_237626
GMI_ES17_c806_8491205
GMI_ES17_c8090_201553
GMI_ES17_c8136_792243
GMI_ES17_c8182_187373
GMI_ES17_c8412_398464
GMI_ES17_c8516_388452
GMI_ES17_c8599_640532
GMI_ES17_c8741_79664
GMI_ES17_c8843_5802322
GMI_ES17_c8906_512300
GMI_ES17_c9652_803866
GMI_ES17_c969_805456
GMI_ES17_c9916_1651154
GMI_ES_CC10109_2831371
GMI_ES_CC10804_287
GMI_ES_CC11290_204280
GMI_ES_CC11658_395510
GMI_ES_CC11826_84
GMI_ES_CC13394_332941
GMI_ES_CC15860_132927
GMI_ES_CC15898_66331
GMI_ES_CC16529_138419
GMI_ES_CC17647_179
GMI_ES_CC17674_57184
GMI_ES_CC2088_5061029
GMI_ES_CC2716_3921189
GMI_ES_CC3511_395836
GMI_ES_CC3702_289224
GMI_ES_CC3989_242520
GMI_ES_CC4005_62
GMI_ES_CC4354_2961890
GMI_ES_CC4504_1921122
GMI_ES_CC4978_509372
GMI_ES_CC5758_34097
GMI_ES_CC6279_474506
GMI_ES_CC6673_460281
GMI_ES_CC6708_301424
GMI_ES_CC7714_103594
GMI_ES_CC7805_275181
GMI_ES_CC8351_255696
GMI_ES_CC8503_89
GMI_ES_CC8700_285307
GMI_ES_CC8805_1612695
GMI_ES_CC8945_103356
GMI_ES_CC9290_178326
GMI_ES_CC9711_432316
GMI_ES_CC9730_217404
GMI_ES_CC9934_55

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.