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  T3/Oat

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment Oliver_2013_OGLE/TAMO301
Select link to view match in Ensembl Plant.

QueryReference Contigposition
GMI_DS_A3_289_88679
GMI_DS_CC11029_65729
GMI_DS_CC12000_73949
GMI_DS_CC3171_2182252
GMI_DS_CC4033_368181
GMI_DS_CC4575_55931
GMI_DS_CC4885_61
GMI_DS_CC5684_996955
GMI_DS_CC8041_85586
GMI_DS_CC8733_129689
GMI_DS_CC8923_203158
GMI_DS_CC9316_186
GMI_DS_CC9934_185513
GMI_DS_oPt-16541_253349
GMI_ES01_c10033_104662
GMI_ES01_c10107_481400
GMI_ES01_c109_982605
GMI_ES01_c11126_277331
GMI_ES01_c11287_335323
GMI_ES01_c11420_274239
GMI_ES01_c11741_182452
GMI_ES01_c11827_414365
GMI_ES01_c11874_1302815
GMI_ES01_c11895_354399
GMI_ES01_c11917_3561417
GMI_ES01_c11975_3221200
GMI_ES01_c12117_562253
GMI_ES01_c12378_433221
GMI_ES01_c12564_2102850
GMI_ES01_c12749_2341325
GMI_ES01_c1287_580285
GMI_ES01_c12952_3491057
GMI_ES01_c1307_465767
GMI_ES01_c13113_1192147
GMI_ES01_c13342_301652
GMI_ES01_c13391_7411352
GMI_ES01_c13403_1021450
GMI_ES01_c13432_1003056
GMI_ES01_c13467_233231
GMI_ES01_c13657_337287
GMI_ES01_c13663_212254
GMI_ES01_c13820_382229
GMI_ES01_c13834_134659
GMI_ES01_c13907_1041285
GMI_ES01_c1394_726436
GMI_ES01_c14001_299249
GMI_ES01_c14065_1592402
GMI_ES01_c14084_302385
GMI_ES01_c14131_1734426
GMI_ES01_c14139_4981500
GMI_ES01_c14233_268101
GMI_ES01_c14397_365360
GMI_ES01_c14650_200487
GMI_ES01_c1475_450101
GMI_ES01_c1493_961012
GMI_ES01_c1511_1015229
GMI_ES01_c15143_210418
GMI_ES01_c15158_404403
GMI_ES01_c15405_389146
GMI_ES01_c15538_405352
GMI_ES01_c15886_573181
GMI_ES01_c16239_1431247
GMI_ES01_c16275_1041501
GMI_ES01_c16302_7583772
GMI_ES01_c1635_3531011
GMI_ES01_c16437_198672
GMI_ES01_c1649_355710
GMI_ES01_c16774_2221063
GMI_ES01_c16901_225383
GMI_ES01_c17064_407979
GMI_ES01_c17183_318429
GMI_ES01_c17235_1441641
GMI_ES01_c1725_728605
GMI_ES01_c17319_464161
GMI_ES01_c17486_304300
GMI_ES01_c17597_189239
GMI_ES01_c18017_440434
GMI_ES01_c18122_4041077
GMI_ES01_c18839_13274
GMI_ES01_c19245_178274
GMI_ES01_c19480_5591289
GMI_ES01_c2010_173489
GMI_ES01_c20367_331260
GMI_ES01_c20384_216494
GMI_ES01_c20737_408790
GMI_ES01_c21239_1901317
GMI_ES01_c2150_256828
GMI_ES01_c21700_173519
GMI_ES01_c22540_100493
GMI_ES01_c22545_242301
GMI_ES01_c22619_1431178
GMI_ES01_c22998_155496
GMI_ES01_c23001_372325
GMI_ES01_c2320_569324
GMI_ES01_c2338_2131205
GMI_ES01_c24051_67503
GMI_ES01_c24109_264352
GMI_ES01_c241_356265
GMI_ES01_c24478_2091322
GMI_ES01_c24656_1051673
GMI_ES01_c24681_389422
GMI_ES01_c25270_712733
GMI_ES01_c25788_216714
GMI_ES01_c25884_1812500
GMI_ES01_c25986_126319
GMI_ES01_c26328_337298
GMI_ES01_c26749_466399
GMI_ES01_c27024_1572481
GMI_ES01_c27535_582524
GMI_ES01_c27692_191159
GMI_ES01_c27869_512520
GMI_ES01_c284_1036293
GMI_ES01_c2878_533558
GMI_ES01_c2879_300348
GMI_ES01_c3178_185196
GMI_ES01_c3397_480326
GMI_ES01_c3447_952137
GMI_ES01_c3759_3582406
GMI_ES01_c3899_470440
GMI_ES01_c3919_841592
GMI_ES01_c4081_1821332
GMI_ES01_c4288_461566
GMI_ES01_c4371_166665
GMI_ES01_c4440_10191981
GMI_ES01_c4452_3251277
GMI_ES01_c4491_147477
GMI_ES01_c4774_1551586
GMI_ES01_c4929_437150
GMI_ES01_c5111_454958
GMI_ES01_c515_543520
GMI_ES01_c5419_407349
GMI_ES01_c5430_1793594
GMI_ES01_c5610_4341324
GMI_ES01_c5633_477310
GMI_ES01_c6298_257241
GMI_ES01_c6499_501349
GMI_ES01_c6574_3492502
GMI_ES01_c658_925191
GMI_ES01_c677_2231036
GMI_ES01_c7872_667220
GMI_ES01_c791_10721001
GMI_ES01_c796_1801044
GMI_ES01_c7970_395207
GMI_ES01_c8015_409410
GMI_ES01_c8043_192540
GMI_ES01_c8241_504341
GMI_ES01_c8301_93103
GMI_ES01_c8337_431490
GMI_ES01_c8356_696852
GMI_ES01_c8470_599278
GMI_ES01_c8527_320324
GMI_ES01_c8552_3371694
GMI_ES01_c8716_2681691
GMI_ES01_c8777_202641
GMI_ES01_c8899_3241857
GMI_ES01_c9044_416294
GMI_ES01_c9159_4553435
GMI_ES01_c9170_468410
GMI_ES01_c9236_115154
GMI_ES01_c9256_320264
GMI_ES01_c9384_567637
GMI_ES01_c9396_3383374
GMI_ES01_c9472_428255
GMI_ES01_c9544_263939
GMI_ES01_c9634_514333
GMI_ES01_c9768_1911270
GMI_ES01_lrc10725_434436
GMI_ES01_lrc10967_551734
GMI_ES01_lrc11151_273283
GMI_ES01_lrc11702_525456
GMI_ES01_lrc12212_4201709
GMI_ES01_lrc12590_96268
GMI_ES01_lrc12621_1035519
GMI_ES01_lrc19995_311361
GMI_ES01_lrc22461_468572
GMI_ES01_lrc22746_3261565
GMI_ES01_lrc22977_5951091
GMI_ES01_lrc28711_407371
GMI_ES01_lrc28828_382291
GMI_ES01_lrc29552_2121126
GMI_ES01_lrc7807_649154
GMI_ES01_lrc8208_4132297
GMI_ES01_lrc8457_6433
GMI_ES01_lrc9332_388368
GMI_ES01_lrc9906_553356
GMI_ES02_c10374_390158
GMI_ES02_c10836_312483
GMI_ES02_c10841_857318
GMI_ES02_c11747_563488
GMI_ES02_c11794_636607
GMI_ES02_c11842_367259
GMI_ES02_c11855_52860
GMI_ES02_c11888_2361894
GMI_ES02_c11913_3561729
GMI_ES02_c12034_866139
GMI_ES02_c12135_181772
GMI_ES02_c12254_159584
GMI_ES02_c12289_3813462
GMI_ES02_c12488_534297
GMI_ES02_c12598_2601442
GMI_ES02_c12621_204222
GMI_ES02_c12721_577174
GMI_ES02_c12737_306248
GMI_ES02_c12761_1833186
GMI_ES02_c13068_3281331
GMI_ES02_c1312_1080307
GMI_ES02_c13135_7522895
GMI_ES02_c13236_1781013
GMI_ES02_c13356_599112
GMI_ES02_c13415_701804
GMI_ES02_c13433_326349
GMI_ES02_c13596_1782239
GMI_ES02_c13726_298840
GMI_ES02_c13817_3111919
GMI_ES02_c13889_164401
GMI_ES02_c14180_257338
GMI_ES02_c14336_416618
GMI_ES02_c14349_2584391
GMI_ES02_c14492_305252
GMI_ES02_c14497_585510
GMI_ES02_c14559_3621292
GMI_ES02_c14642_662102
GMI_ES02_c14677_4561086
GMI_ES02_c14927_4781847
GMI_ES02_c15089_1962492
GMI_ES02_c15112_271847
GMI_ES02_c15462_413353
GMI_ES02_c15540_620797
GMI_ES02_c15652_109742
GMI_ES02_c15682_295233
GMI_ES02_c15952_3482184
GMI_ES02_c16096_626479
GMI_ES02_c16266_250343
GMI_ES02_c16344_816125
GMI_ES02_c16349_2942408
GMI_ES02_c1643_7921213
GMI_ES02_c16931_154612
GMI_ES02_c17364_288322
GMI_ES02_c17403_291468
GMI_ES02_c17655_31677
GMI_ES02_c17906_415337
GMI_ES02_c17921_986226
GMI_ES02_c1819_259407
GMI_ES02_c18291_3453540
GMI_ES02_c18621_282279
GMI_ES02_c19005_2231497
GMI_ES02_c19419_304418
GMI_ES02_c1946_2241763
GMI_ES02_c19599_2451176
GMI_ES02_c19974_185430
GMI_ES02_c19995_299238
GMI_ES02_c20191_129563
GMI_ES02_c2053_415635
GMI_ES02_c20648_208266
GMI_ES02_c20678_948610
GMI_ES02_c21402_611122
GMI_ES02_c21486_3951567
GMI_ES02_c21781_486135
GMI_ES02_c22225_492142
GMI_ES02_c2281_159132
GMI_ES02_c23066_496400
GMI_ES02_c23179_274842
GMI_ES02_c23736_1661010
GMI_ES02_c2449_5521122
GMI_ES02_c247_241165
GMI_ES02_c25461_2771563
GMI_ES02_c2554_4261214
GMI_ES02_c26223_268349
GMI_ES02_c26937_1681568
GMI_ES02_c27778_528510
GMI_ES02_c28204_255101
GMI_ES02_c28832_3081519
GMI_ES02_c2923_535216
GMI_ES02_c2959_310729
GMI_ES02_c2961_2571108
GMI_ES02_c3044_164358
GMI_ES02_c31310_407263
GMI_ES02_c3181_680134
GMI_ES02_c31937_212267
GMI_ES02_c3206_2931344
GMI_ES02_c3243_375373
GMI_ES02_c33014_195904
GMI_ES02_c33619_381352
GMI_ES02_c34493_2373121
GMI_ES02_c34691_2362588
GMI_ES02_c349_407235
GMI_ES02_c35475_972147
GMI_ES02_c35886_6102413
GMI_ES02_c3604_1542403
GMI_ES02_c36828_363101
GMI_ES02_c37525_294261
GMI_ES02_c38081_363299
GMI_ES02_c38199_367559
GMI_ES02_c38444_270224
GMI_ES02_c38800_4181067
GMI_ES02_c38960_346641
GMI_ES02_c4066_1651857
GMI_ES02_c4080_192803
GMI_ES02_c4100_1210123
GMI_ES02_c4114_7602468
GMI_ES02_c4132_326750
GMI_ES02_c4268_6041671
GMI_ES02_c4277_7101784
GMI_ES02_c4496_157136
GMI_ES02_c4509_295296
GMI_ES02_c4655_137757
GMI_ES02_c4756_5151721
GMI_ES02_c4822_1691429
GMI_ES02_c4957_3001031
GMI_ES02_c5098_397726
GMI_ES02_c5884_318383
GMI_ES02_c6122_167593
GMI_ES02_c6368_605498
GMI_ES02_c6507_5201133
GMI_ES02_c6762_3081673
GMI_ES02_c6784_277345
GMI_ES02_c6920_143776
GMI_ES02_c7238_473576
GMI_ES02_c7461_275303
GMI_ES02_c7694_423443
GMI_ES02_c8186_4431819
GMI_ES02_c8277_5061573
GMI_ES02_c841_728743
GMI_ES02_c8676_3602358
GMI_ES02_c8845_199165
GMI_ES02_c8953_2421741
GMI_ES02_c911_58010
GMI_ES02_c9794_2692244
GMI_ES02_lrc12182_165126
GMI_ES02_lrc13446_328195
GMI_ES02_lrc13785_4332264
GMI_ES02_lrc13788_346193
GMI_ES02_lrc17781_2342003
GMI_ES02_lrc18698_350145
GMI_ES02_lrc18911_1904123
GMI_ES02_lrc20576_4051061
GMI_ES02_lrc34335_153974
GMI_ES02_lrc37108_772151
GMI_ES02_lrc37378_471219
GMI_ES02_lrc37952_1061343
GMI_ES15_c10103_4191781
GMI_ES15_c10291_118151
GMI_ES15_c10388_464101
GMI_ES15_c10680_3251130
GMI_ES15_c11012_143501
GMI_ES15_c1114_170867
GMI_ES15_c112_624455
GMI_ES15_c11428_323430
GMI_ES15_c12274_1891498
GMI_ES15_c12355_2871341
GMI_ES15_c12378_444794
GMI_ES15_c12436_395199
GMI_ES15_c12443_659643
GMI_ES15_c12600_230766
GMI_ES15_c12694_287833
GMI_ES15_c1273_527347
GMI_ES15_c13434_347200
GMI_ES15_c13526_397215
GMI_ES15_c13627_4581039
GMI_ES15_c13674_329400
GMI_ES15_c13888_2121144
GMI_ES15_c14048_223734
GMI_ES15_c14129_69858
GMI_ES15_c14533_341940
GMI_ES15_c14817_204799
GMI_ES15_c15112_3171675
GMI_ES15_c15399_80542
GMI_ES15_c15451_3692136
GMI_ES15_c15766_421746
GMI_ES15_c15790_334959
GMI_ES15_c1630_7861349
GMI_ES15_c16380_475117
GMI_ES15_c17005_4792761
GMI_ES15_c17486_204765
GMI_ES15_c17743_247390
GMI_ES15_c17765_180564
GMI_ES15_c1806_90717
GMI_ES15_c1855_452251
GMI_ES15_c19227_114669
GMI_ES15_c20302_110658
GMI_ES15_c2041_605155
GMI_ES15_c2046_3302983
GMI_ES15_c2193_426479
GMI_ES15_c2709_4051582
GMI_ES15_c2822_5281409
GMI_ES15_c3159_412237
GMI_ES15_c3169_2222582
GMI_ES15_c3200_563122
GMI_ES15_c3296_521371
GMI_ES15_c349_5321278
GMI_ES15_c3806_357720
GMI_ES15_c4222_543258
GMI_ES15_c4567_646256
GMI_ES15_c482_113670
GMI_ES15_c497_4867084
GMI_ES15_c5125_136180
GMI_ES15_c5216_593280
GMI_ES15_c5280_161460
GMI_ES15_c5289_317754
GMI_ES15_c5315_1562453
GMI_ES15_c5368_259534
GMI_ES15_c5385_3831578
GMI_ES15_c5441_4391432
GMI_ES15_c5554_377348
GMI_ES15_c5819_415345
GMI_ES15_c5908_278433
GMI_ES15_c5920_2451055
GMI_ES15_c5951_3644196
GMI_ES15_c5973_3113545
GMI_ES15_c6102_4421288
GMI_ES15_c6115_586345
GMI_ES15_c6155_291537
GMI_ES15_c6167_5251429
GMI_ES15_c6341_2774159
GMI_ES15_c6392_93896
GMI_ES15_c6587_2921481
GMI_ES15_c6652_2533604
GMI_ES15_c6756_354470
GMI_ES15_c6822_337143
GMI_ES15_c6870_218206
GMI_ES15_c6914_663349
GMI_ES15_c6921_4511041
GMI_ES15_c6979_338348
GMI_ES15_c7016_483421
GMI_ES15_c713_8481396
GMI_ES15_c7179_3882140
GMI_ES15_c7196_299393
GMI_ES15_c7272_3871008
GMI_ES15_c7654_479365
GMI_ES15_c7719_163939
GMI_ES15_c7722_409736
GMI_ES15_c7819_478648
GMI_ES15_c794_171692
GMI_ES15_c8064_341261
GMI_ES15_c8191_415266
GMI_ES15_c8238_156574
GMI_ES15_c8389_147777
GMI_ES15_c858_5071436
GMI_ES15_c8687_120630
GMI_ES15_c8836_3133589
GMI_ES15_c900_850101
GMI_ES15_c926_270462
GMI_ES15_c9419_304808
GMI_ES15_lrc10789_2991937
GMI_ES15_lrc12312_503607
GMI_ES15_lrc19149_99886
GMI_ES15_lrc19345_536486
GMI_ES17_c10035_695300
GMI_ES17_c10073_640336
GMI_ES17_c10388_394452
GMI_ES17_c10593_5081124
GMI_ES17_c1086_770281
GMI_ES17_c10921_231482
GMI_ES17_c1115_1271092
GMI_ES17_c11262_129489
GMI_ES17_c1186_142986
GMI_ES17_c11967_3963561
GMI_ES17_c1205_2131577
GMI_ES17_c12067_507497
GMI_ES17_c12203_326643
GMI_ES17_c12269_176643
GMI_ES17_c12516_8181500
GMI_ES17_c12536_430530
GMI_ES17_c12958_2731380
GMI_ES17_c13450_1512420
GMI_ES17_c1365_2161006
GMI_ES17_c13885_313344
GMI_ES17_c13962_6001328
GMI_ES17_c14163_394434
GMI_ES17_c1546_405504
GMI_ES17_c15844_381262
GMI_ES17_c1618_5191146
GMI_ES17_c16539_4721891
GMI_ES17_c17329_384830
GMI_ES17_c17442_3341426
GMI_ES17_c17467_4101211
GMI_ES17_c17526_5071434
GMI_ES17_c17558_304322
GMI_ES17_c17781_2685916
GMI_ES17_c1779_644177
GMI_ES17_c18457_130289
GMI_ES17_c18582_193173
GMI_ES17_c18688_4491914
GMI_ES17_c18781_741275
GMI_ES17_c19062_1911286
GMI_ES17_c19068_5311131
GMI_ES17_c1926_571221
GMI_ES17_c197_1141106
GMI_ES17_c20393_596351
GMI_ES17_c2063_243611
GMI_ES17_c20660_396569
GMI_ES17_c20752_1084114
GMI_ES17_c21168_588256
GMI_ES17_c2122_619331
GMI_ES17_c2183_9361348
GMI_ES17_c2251_2831126
GMI_ES17_c2286_2851168
GMI_ES17_c2356_160629
GMI_ES17_c244_1098140
GMI_ES17_c2454_883138
GMI_ES17_c2598_325885
GMI_ES17_c2651_991970
GMI_ES17_c2656_146754
GMI_ES17_c2699_4413031
GMI_ES17_c2707_866322
GMI_ES17_c2766_159294
GMI_ES17_c2826_360661
GMI_ES17_c2941_220706
GMI_ES17_c3038_487921
GMI_ES17_c3051_143341
GMI_ES17_c3079_6021702
GMI_ES17_c3200_273555
GMI_ES17_c3218_276261
GMI_ES17_c3271_475344
GMI_ES17_c3291_859215
GMI_ES17_c3309_961348
GMI_ES17_c3320_7862306
GMI_ES17_c3397_1672004
GMI_ES17_c3418_95865
GMI_ES17_c3625_404163
GMI_ES17_c3693_421231
GMI_ES17_c3807_825130
GMI_ES17_c3844_1813543
GMI_ES17_c3846_3962372
GMI_ES17_c3969_600611
GMI_ES17_c4241_356256
GMI_ES17_c4266_283268
GMI_ES17_c4268_5542529
GMI_ES17_c4295_4321701
GMI_ES17_c4498_2221286
GMI_ES17_c4515_297804
GMI_ES17_c4663_648244
GMI_ES17_c4700_516206
GMI_ES17_c4730_3582158
GMI_ES17_c4863_2941809
GMI_ES17_c5169_555425
GMI_ES17_c5197_5031431
GMI_ES17_c528_116705
GMI_ES17_c5346_548678
GMI_ES17_c5590_702411
GMI_ES17_c5637_152528
GMI_ES17_c5666_258457
GMI_ES17_c5744_689382
GMI_ES17_c5762_827116
GMI_ES17_c5784_7522049
GMI_ES17_c5832_342114
GMI_ES17_c5870_387685
GMI_ES17_c6299_2721191
GMI_ES17_c655_8911131
GMI_ES17_c6857_627429
GMI_ES17_c7183_281881
GMI_ES17_c7306_1002495
GMI_ES17_c7323_8313886
GMI_ES17_c7355_434854
GMI_ES17_c7387_3674202
GMI_ES17_c766_770338
GMI_ES17_c7736_5651155
GMI_ES17_c786_412721
GMI_ES17_c7967_247535
GMI_ES17_c7997_871189
GMI_ES17_c8066_2372692
GMI_ES17_c806_8491417
GMI_ES17_c8085_232925
GMI_ES17_c8090_201656
GMI_ES17_c8136_792289
GMI_ES17_c8182_187389
GMI_ES17_c8412_398718
GMI_ES17_c8444_506227
GMI_ES17_c8516_3882441
GMI_ES17_c8599_6401356
GMI_ES17_c8729_764769
GMI_ES17_c8741_79500
GMI_ES17_c882_882373
GMI_ES17_c8843_580411
GMI_ES17_c8906_512670
GMI_ES17_c9087_425141
GMI_ES17_c9448_286384
GMI_ES17_c9625_4191895
GMI_ES17_c9652_803106
GMI_ES17_c969_8051455
GMI_ES17_c9916_165755
GMI_ES17_lrc11645_145624
GMI_ES17_lrc20311_707481
GMI_ES17_lrc9623_4751722
GMI_ES_CC10109_2831503
GMI_ES_CC10629_401208
GMI_ES_CC10804_287
GMI_ES_CC11028_196493
GMI_ES_CC11076_204614
GMI_ES_CC11271_65
GMI_ES_CC11290_204481
GMI_ES_CC11621_2301533
GMI_ES_CC11658_3952527
GMI_ES_CC11826_84
GMI_ES_CC11933_314238
GMI_ES_CC13348_93
GMI_ES_CC13394_332557
GMI_ES_CC13637_1732711
GMI_ES_CC13848_2102292
GMI_ES_CC14261_1413099
GMI_ES_CC15237_1341826
GMI_ES_CC15860_1321460
GMI_ES_CC15898_66593
GMI_ES_CC16159_120429
GMI_ES_CC16289_111448
GMI_ES_CC17647_179
GMI_ES_CC17674_571561
GMI_ES_CC18255_93
GMI_ES_CC2088_5061022
GMI_ES_CC2716_392145
GMI_ES_CC3511_395318
GMI_ES_CC3702_2891836
GMI_ES_CC3737_371401
GMI_ES_CC3989_2421087
GMI_ES_CC4005_62
GMI_ES_CC4354_2961838
GMI_ES_CC4504_192436
GMI_ES_CC4978_509276
GMI_ES_CC5758_3402810
GMI_ES_CC6279_474789
GMI_ES_CC6557_563
GMI_ES_CC6673_4601709
GMI_ES_CC6708_301490
GMI_ES_CC7307_489
GMI_ES_CC7714_103631
GMI_ES_CC7805_275369
GMI_ES_CC8351_255693
GMI_ES_CC8503_89
GMI_ES_CC8805_16110066
GMI_ES_CC8945_103770
GMI_ES_CC9711_432754
GMI_ES_CC9730_2173228

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.