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  T3/Oat

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment Oliver_2013_OTANA/PI260616
Select link to view match in Ensembl Plant.

QueryReference Contigposition
GMI_DS_CC11029_65741
GMI_DS_CC3171_218471
GMI_DS_CC7795_77431
GMI_ES01_c10216_255908
GMI_ES01_c11420_27461
GMI_ES01_c11741_1821515
GMI_ES01_c11960_237328
GMI_ES01_c1287_5801850
GMI_ES01_c1307_465114
GMI_ES01_c13403_10272
GMI_ES01_c13663_212272
GMI_ES01_c13907_104110
GMI_ES01_c14001_2997
GMI_ES01_c14065_1592423
GMI_ES01_c14139_4981465
GMI_ES01_c14397_365555
GMI_ES01_c1475_4501443
GMI_ES01_c1511_101581
GMI_ES01_c15143_210222
GMI_ES01_c1517_37861
GMI_ES01_c15405_389153
GMI_ES01_c15628_3811653
GMI_ES01_c16275_104578
GMI_ES01_c1638_1111901
GMI_ES01_c16437_198500
GMI_ES01_c16727_290251
GMI_ES01_c16774_222921
GMI_ES01_c17064_407475
GMI_ES01_c17183_318329
GMI_ES01_c1725_728755
GMI_ES01_c17486_304472
GMI_ES01_c18017_44093
GMI_ES01_c22124_2052386
GMI_ES01_c233_61205
GMI_ES01_c24109_264366
GMI_ES01_c25884_1812496
GMI_ES01_c27869_5121810
GMI_ES01_c27945_487102
GMI_ES01_c2879_3001349
GMI_ES01_c30497_105650
GMI_ES01_c3327_1801473
GMI_ES01_c3759_358321
GMI_ES01_c3899_470164
GMI_ES01_c4288_461972
GMI_ES01_c4371_166186
GMI_ES01_c461_12881469
GMI_ES01_c4929_437182
GMI_ES01_c515_543110
GMI_ES01_c5633_477313
GMI_ES01_c6574_3491563
GMI_ES01_c658_92547
GMI_ES01_c750_150471
GMI_ES01_c791_1072130
GMI_ES01_c7940_496431
GMI_ES01_c8343_342319
GMI_ES01_c9910_138741
GMI_ES01_lrc13031_95144
GMI_ES01_lrc29552_212393
GMI_ES01_lrc7807_649272
GMI_ES02_c10836_312116
GMI_ES02_c10841_857832
GMI_ES02_c11747_563491
GMI_ES02_c11794_6361234
GMI_ES02_c12598_2601394
GMI_ES02_c12721_577103
GMI_ES02_c12761_183347
GMI_ES02_c13068_32846
GMI_ES02_c13447_2291644
GMI_ES02_c13596_178123
GMI_ES02_c13608_538250
GMI_ES02_c13712_383229
GMI_ES02_c13726_298780
GMI_ES02_c14180_257322
GMI_ES02_c14478_154485
GMI_ES02_c14555_217505
GMI_ES02_c14559_362414
GMI_ES02_c15089_196152
GMI_ES02_c15462_413308
GMI_ES02_c15652_109386
GMI_ES02_c15952_348485
GMI_ES02_c16987_26868
GMI_ES02_c17191_397650
GMI_ES02_c17907_296342
GMI_ES02_c18066_185441
GMI_ES02_c1819_259226
GMI_ES02_c18621_282182
GMI_ES02_c1946_224879
GMI_ES02_c19974_18544
GMI_ES02_c20191_129167
GMI_ES02_c22225_492215
GMI_ES02_c23210_25767
GMI_ES02_c23736_166538
GMI_ES02_c247_241293
GMI_ES02_c25461_2771376
GMI_ES02_c2554_426936
GMI_ES02_c26223_2684353
GMI_ES02_c27723_4262103
GMI_ES02_c29199_390417
GMI_ES02_c2923_535197
GMI_ES02_c2959_310411
GMI_ES02_c3044_164244
GMI_ES02_c31310_4071043
GMI_ES02_c31937_212552
GMI_ES02_c3206_2931325
GMI_ES02_c349_407431
GMI_ES02_c3577_672348
GMI_ES02_c35886_6102434
GMI_ES02_c36026_2841276
GMI_ES02_c37368_176487
GMI_ES02_c38081_363324
GMI_ES02_c38444_270101
GMI_ES02_c38960_346748
GMI_ES02_c4091_462305
GMI_ES02_c4144_303863
GMI_ES02_c4277_710185
GMI_ES02_c5098_397630
GMI_ES02_c6122_167560
GMI_ES02_c6368_605401
GMI_ES02_c6762_3081683
GMI_ES02_c7768_318143
GMI_ES02_c8186_44391
GMI_ES02_c8298_599291
GMI_ES02_c8845_199186
GMI_ES02_c933_584109
GMI_ES02_c9794_269459
GMI_ES02_lrc13446_328544
GMI_ES02_lrc34335_1531227
GMI_ES02_lrc37378_471229
GMI_ES15_c10866_209789
GMI_ES15_c11399_330384
GMI_ES15_c12274_189463
GMI_ES15_c12355_287318
GMI_ES15_c1273_527331
GMI_ES15_c1324_755621
GMI_ES15_c13434_347284
GMI_ES15_c13888_2121083
GMI_ES15_c14533_341585
GMI_ES15_c14565_407319
GMI_ES15_c1630_786154
GMI_ES15_c16452_371504
GMI_ES15_c16679_330352
GMI_ES15_c1710_4671266
GMI_ES15_c20302_110541
GMI_ES15_c2046_330532
GMI_ES15_c2110_73076
GMI_ES15_c222_568725
GMI_ES15_c2524_413403
GMI_ES15_c2709_405300
GMI_ES15_c2802_6252093
GMI_ES15_c2822_528160
GMI_ES15_c285_271459
GMI_ES15_c2877_179806
GMI_ES15_c3200_563562
GMI_ES15_c3362_5061193
GMI_ES15_c3806_357302
GMI_ES15_c4017_310362
GMI_ES15_c4231_1582443
GMI_ES15_c497_486684
GMI_ES15_c5280_161124
GMI_ES15_c5315_156406
GMI_ES15_c5368_259942
GMI_ES15_c5373_4091687
GMI_ES15_c5441_43963
GMI_ES15_c5554_37764
GMI_ES15_c5599_153108
GMI_ES15_c5767_361541
GMI_ES15_c5908_278784
GMI_ES15_c605_6381653
GMI_ES15_c6115_5861326
GMI_ES15_c6167_5251321
GMI_ES15_c6186_167492
GMI_ES15_c6229_566162
GMI_ES15_c6329_461226
GMI_ES15_c6341_2771481
GMI_ES15_c6870_218198
GMI_ES15_c6993_447221
GMI_ES15_c7016_483629
GMI_ES15_c7272_387198
GMI_ES15_c7666_522490
GMI_ES15_c8064_341995
GMI_ES15_c858_5071466
GMI_ES15_c8655_387414
GMI_ES15_c8970_315359
GMI_ES15_c8975_7291352
GMI_ES15_lrc12312_503428
GMI_ES15_lrc19345_536268
GMI_ES15_lrc19562_6991501
GMI_ES17_c10073_640319
GMI_ES17_c11186_5551765
GMI_ES17_c1186_1421036
GMI_ES17_c11978_3611500
GMI_ES17_c12067_507518
GMI_ES17_c12284_305656
GMI_ES17_c12316_29167
GMI_ES17_c12958_273804
GMI_ES17_c13128_25482
GMI_ES17_c1365_216930
GMI_ES17_c13962_600236
GMI_ES17_c1429_455800
GMI_ES17_c1488_898213
GMI_ES17_c1620_564402
GMI_ES17_c16539_4721585
GMI_ES17_c1727_406412
GMI_ES17_c17993_168409
GMI_ES17_c18155_185183
GMI_ES17_c1918_5291027
GMI_ES17_c19385_93278
GMI_ES17_c2251_28361
GMI_ES17_c2276_22414
GMI_ES17_c2308_1026158
GMI_ES17_c2356_160572
GMI_ES17_c244_10981724
GMI_ES17_c2454_883409
GMI_ES17_c2598_3252048
GMI_ES17_c2707_866316
GMI_ES17_c2767_643675
GMI_ES17_c2826_360718
GMI_ES17_c3200_2731541
GMI_ES17_c327_972136
GMI_ES17_c3291_8592115
GMI_ES17_c3309_96790
GMI_ES17_c3397_167416
GMI_ES17_c3807_8251278
GMI_ES17_c3808_32471
GMI_ES17_c3844_181626
GMI_ES17_c3846_396101
GMI_ES17_c3969_6003228
GMI_ES17_c4096_846837
GMI_ES17_c4245_550616
GMI_ES17_c4266_283622
GMI_ES17_c4295_4321313
GMI_ES17_c4515_297497
GMI_ES17_c4663_6481139
GMI_ES17_c5162_445232
GMI_ES17_c5637_1521228
GMI_ES17_c5666_258431
GMI_ES17_c5832_342224
GMI_ES17_c655_8911053
GMI_ES17_c7296_694352
GMI_ES17_c7306_1002159
GMI_ES17_c7323_8312832
GMI_ES17_c7355_434136
GMI_ES17_c786_412144
GMI_ES17_c8066_237626
GMI_ES17_c8741_79664
GMI_ES17_lrc19617_111419
GMI_ES17_lrc20004_472811
GMI_ES_CC10804_287
GMI_ES_CC10812_102853
GMI_ES_CC10979_54
GMI_ES_CC11826_84
GMI_ES_CC12468_66
GMI_ES_CC15133_247
GMI_ES_CC15389_69259
GMI_ES_CC15404_67
GMI_ES_CC16445_119423
GMI_ES_CC17674_57184
GMI_ES_CC2132_3611684
GMI_ES_CC2716_3921189
GMI_ES_CC3511_395836
GMI_ES_CC3989_242520
GMI_ES_CC4354_2961890
GMI_ES_CC4703_354539
GMI_ES_CC5758_34097
GMI_ES_CC6497_157801
GMI_ES_CC6708_301424
GMI_ES_CC7714_103594
GMI_ES_CC7805_275181
GMI_ES_CC8499_229216
GMI_ES_CC9362_188731
GMI_ES_CC9431_260291
GMI_ES_CC9730_217404
GMI_ES_CC9782_260468

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.