Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment Oliver_2013_OTANA/PI260616
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position
|
| GMI_DS_A3_289_88 | | 679
|
| GMI_DS_CC11029_65 | | 729
|
| GMI_DS_CC11787_243 | | 99
|
| GMI_DS_CC3171_218 | | 2252
|
| GMI_DS_CC4033_368 | | 181
|
| GMI_DS_CC7795_77 | | 204
|
| GMI_DS_CC8041_85 | | 586
|
| GMI_DS_CC9060_176 | | 1643
|
| GMI_DS_CC9316_186 | |
|
| GMI_DS_oPt-16541_253 | | 349
|
| GMI_ES01_c10216_255 | | 321
|
| GMI_ES01_c11420_274 | | 239
|
| GMI_ES01_c11741_182 | | 452
|
| GMI_ES01_c11960_237 | | 368
|
| GMI_ES01_c1287_580 | | 285
|
| GMI_ES01_c1307_465 | | 767
|
| GMI_ES01_c13403_102 | | 1450
|
| GMI_ES01_c13432_100 | | 3056
|
| GMI_ES01_c13663_212 | | 254
|
| GMI_ES01_c13907_104 | | 1285
|
| GMI_ES01_c14001_299 | | 249
|
| GMI_ES01_c14065_159 | | 2402
|
| GMI_ES01_c14139_498 | | 1500
|
| GMI_ES01_c14233_268 | | 101
|
| GMI_ES01_c14397_365 | | 360
|
| GMI_ES01_c1475_450 | | 101
|
| GMI_ES01_c1511_1015 | | 229
|
| GMI_ES01_c15143_210 | | 418
|
| GMI_ES01_c15405_389 | | 146
|
| GMI_ES01_c15628_381 | | 672
|
| GMI_ES01_c15886_573 | | 181
|
| GMI_ES01_c16275_104 | | 1501
|
| GMI_ES01_c1638_111 | | 2035
|
| GMI_ES01_c16437_198 | | 672
|
| GMI_ES01_c16727_290 | | 241
|
| GMI_ES01_c16774_222 | | 1063
|
| GMI_ES01_c17064_407 | | 979
|
| GMI_ES01_c17183_318 | | 429
|
| GMI_ES01_c1725_728 | | 605
|
| GMI_ES01_c17486_304 | | 300
|
| GMI_ES01_c18017_440 | | 434
|
| GMI_ES01_c20367_331 | | 260
|
| GMI_ES01_c22124_205 | | 372
|
| GMI_ES01_c22540_100 | | 493
|
| GMI_ES01_c22545_242 | | 301
|
| GMI_ES01_c22619_143 | | 1178
|
| GMI_ES01_c24109_264 | | 352
|
| GMI_ES01_c25270_71 | | 2733
|
| GMI_ES01_c25884_181 | | 2500
|
| GMI_ES01_c26749_466 | | 399
|
| GMI_ES01_c27024_157 | | 2481
|
| GMI_ES01_c27869_512 | | 520
|
| GMI_ES01_c2879_300 | | 348
|
| GMI_ES01_c3759_358 | | 2406
|
| GMI_ES01_c3899_470 | | 440
|
| GMI_ES01_c4288_461 | | 566
|
| GMI_ES01_c4371_166 | | 665
|
| GMI_ES01_c4491_147 | | 477
|
| GMI_ES01_c461_1288 | | 157
|
| GMI_ES01_c4929_437 | | 150
|
| GMI_ES01_c515_543 | | 520
|
| GMI_ES01_c5633_477 | | 310
|
| GMI_ES01_c6574_349 | | 2502
|
| GMI_ES01_c658_925 | | 191
|
| GMI_ES01_c750_150 | | 521
|
| GMI_ES01_c791_1072 | | 1001
|
| GMI_ES01_c796_180 | | 1044
|
| GMI_ES01_c7970_395 | | 207
|
| GMI_ES01_c8121_663 | | 151
|
| GMI_ES01_c8337_431 | | 490
|
| GMI_ES01_c8343_342 | | 321
|
| GMI_ES01_c8445_691 | | 119
|
| GMI_ES01_c8716_268 | | 1691
|
| GMI_ES01_c9910_138 | | 2707
|
| GMI_ES01_lrc16961_353 | | 1360
|
| GMI_ES01_lrc29552_212 | | 1126
|
| GMI_ES01_lrc7807_649 | | 154
|
| GMI_ES01_lrc9332_388 | | 368
|
| GMI_ES02_c10836_312 | | 483
|
| GMI_ES02_c10841_857 | | 318
|
| GMI_ES02_c11747_563 | | 488
|
| GMI_ES02_c11794_636 | | 607
|
| GMI_ES02_c11918_179 | | 1878
|
| GMI_ES02_c12289_381 | | 3462
|
| GMI_ES02_c12488_534 | | 297
|
| GMI_ES02_c12598_260 | | 1442
|
| GMI_ES02_c12621_204 | | 222
|
| GMI_ES02_c12721_577 | | 174
|
| GMI_ES02_c12737_306 | | 248
|
| GMI_ES02_c12761_183 | | 3186
|
| GMI_ES02_c13068_328 | | 1331
|
| GMI_ES02_c13447_229 | | 320
|
| GMI_ES02_c13596_178 | | 2239
|
| GMI_ES02_c13608_538 | | 251
|
| GMI_ES02_c13726_298 | | 840
|
| GMI_ES02_c14180_257 | | 338
|
| GMI_ES02_c14478_154 | | 1061
|
| GMI_ES02_c14555_217 | | 1190
|
| GMI_ES02_c14559_362 | | 1292
|
| GMI_ES02_c14677_456 | | 1086
|
| GMI_ES02_c15089_196 | | 2492
|
| GMI_ES02_c15462_413 | | 353
|
| GMI_ES02_c15481_563 | | 421
|
| GMI_ES02_c15652_109 | | 742
|
| GMI_ES02_c15952_348 | | 2184
|
| GMI_ES02_c16987_268 | | 373
|
| GMI_ES02_c17191_397 | | 735
|
| GMI_ES02_c17364_288 | | 322
|
| GMI_ES02_c17655_316 | | 77
|
| GMI_ES02_c17906_415 | | 337
|
| GMI_ES02_c17907_296 | | 1148
|
| GMI_ES02_c18066_185 | | 491
|
| GMI_ES02_c1819_259 | | 407
|
| GMI_ES02_c18621_282 | | 279
|
| GMI_ES02_c1946_224 | | 1763
|
| GMI_ES02_c19974_185 | | 430
|
| GMI_ES02_c20191_129 | | 563
|
| GMI_ES02_c21781_486 | | 135
|
| GMI_ES02_c22225_492 | | 142
|
| GMI_ES02_c23210_257 | | 288
|
| GMI_ES02_c23736_166 | | 1010
|
| GMI_ES02_c247_241 | | 165
|
| GMI_ES02_c25461_277 | | 1563
|
| GMI_ES02_c2554_426 | | 1214
|
| GMI_ES02_c26223_268 | | 349
|
| GMI_ES02_c27723_426 | | 300
|
| GMI_ES02_c27778_528 | | 510
|
| GMI_ES02_c29199_390 | | 911
|
| GMI_ES02_c2923_535 | | 216
|
| GMI_ES02_c2959_310 | | 729
|
| GMI_ES02_c3044_164 | | 358
|
| GMI_ES02_c31310_407 | | 263
|
| GMI_ES02_c31937_212 | | 267
|
| GMI_ES02_c3206_293 | | 1344
|
| GMI_ES02_c33619_381 | | 352
|
| GMI_ES02_c34690_199 | | 157
|
| GMI_ES02_c349_407 | | 235
|
| GMI_ES02_c35886_610 | | 2413
|
| GMI_ES02_c36026_284 | | 120
|
| GMI_ES02_c37368_176 | | 1025
|
| GMI_ES02_c38081_363 | | 299
|
| GMI_ES02_c38444_270 | | 224
|
| GMI_ES02_c38960_346 | | 641
|
| GMI_ES02_c4277_710 | | 1784
|
| GMI_ES02_c5098_397 | | 726
|
| GMI_ES02_c5884_318 | | 383
|
| GMI_ES02_c6122_167 | | 593
|
| GMI_ES02_c6368_605 | | 498
|
| GMI_ES02_c6507_520 | | 1133
|
| GMI_ES02_c6762_308 | | 1673
|
| GMI_ES02_c6920_143 | | 776
|
| GMI_ES02_c7768_318 | | 2112
|
| GMI_ES02_c8186_443 | | 1819
|
| GMI_ES02_c8298_599 | | 302
|
| GMI_ES02_c8845_199 | | 165
|
| GMI_ES02_c911_580 | | 10
|
| GMI_ES02_c9794_269 | | 2244
|
| GMI_ES02_lrc12182_165 | | 126
|
| GMI_ES02_lrc13446_328 | | 195
|
| GMI_ES02_lrc13788_346 | | 193
|
| GMI_ES02_lrc18911_190 | | 4123
|
| GMI_ES02_lrc20576_405 | | 1061
|
| GMI_ES02_lrc34335_153 | | 974
|
| GMI_ES02_lrc37108_772 | | 151
|
| GMI_ES02_lrc37378_471 | | 219
|
| GMI_ES15_c10103_419 | | 1781
|
| GMI_ES15_c10388_464 | | 101
|
| GMI_ES15_c10509_256 | | 2355
|
| GMI_ES15_c10742_192 | | 873
|
| GMI_ES15_c10866_209 | | 561
|
| GMI_ES15_c11399_330 | | 489
|
| GMI_ES15_c12274_189 | | 1498
|
| GMI_ES15_c12355_287 | | 1341
|
| GMI_ES15_c1273_527 | | 347
|
| GMI_ES15_c1324_755 | | 1564
|
| GMI_ES15_c13434_347 | | 200
|
| GMI_ES15_c13627_458 | | 1039
|
| GMI_ES15_c13674_329 | | 400
|
| GMI_ES15_c13888_212 | | 1144
|
| GMI_ES15_c14048_223 | | 734
|
| GMI_ES15_c14129_69 | | 858
|
| GMI_ES15_c14533_341 | | 940
|
| GMI_ES15_c14565_407 | | 231
|
| GMI_ES15_c15399_80 | | 542
|
| GMI_ES15_c1630_786 | | 1349
|
| GMI_ES15_c16452_371 | | 509
|
| GMI_ES15_c16679_330 | | 1164
|
| GMI_ES15_c17005_479 | | 2761
|
| GMI_ES15_c1710_467 | | 431
|
| GMI_ES15_c20302_110 | | 658
|
| GMI_ES15_c2046_330 | | 2983
|
| GMI_ES15_c2110_730 | | 178
|
| GMI_ES15_c222_568 | | 290
|
| GMI_ES15_c2524_413 | | 468
|
| GMI_ES15_c2709_405 | | 1582
|
| GMI_ES15_c2802_625 | | 132
|
| GMI_ES15_c2822_528 | | 1409
|
| GMI_ES15_c285_271 | | 789
|
| GMI_ES15_c2996_540 | | 102
|
| GMI_ES15_c3200_563 | | 122
|
| GMI_ES15_c337_508 | | 1134
|
| GMI_ES15_c3806_357 | | 720
|
| GMI_ES15_c4017_310 | | 102
|
| GMI_ES15_c4217_214 | | 404
|
| GMI_ES15_c4222_543 | | 258
|
| GMI_ES15_c4231_158 | | 573
|
| GMI_ES15_c4387_160 | | 134
|
| GMI_ES15_c497_486 | | 7084
|
| GMI_ES15_c5280_161 | | 460
|
| GMI_ES15_c5315_156 | | 2453
|
| GMI_ES15_c5368_259 | | 534
|
| GMI_ES15_c5373_409 | | 501
|
| GMI_ES15_c5385_383 | | 1578
|
| GMI_ES15_c5441_439 | | 1432
|
| GMI_ES15_c5554_377 | | 348
|
| GMI_ES15_c5599_153 | | 916
|
| GMI_ES15_c5767_361 | | 572
|
| GMI_ES15_c5908_278 | | 433
|
| GMI_ES15_c5973_311 | | 3545
|
| GMI_ES15_c6115_586 | | 345
|
| GMI_ES15_c6167_525 | | 1429
|
| GMI_ES15_c6186_167 | | 683
|
| GMI_ES15_c6229_566 | | 385
|
| GMI_ES15_c6341_277 | | 4159
|
| GMI_ES15_c6348_420 | | 1316
|
| GMI_ES15_c6870_218 | | 206
|
| GMI_ES15_c6925_619 | | 217
|
| GMI_ES15_c6993_447 | | 1190
|
| GMI_ES15_c7016_483 | | 421
|
| GMI_ES15_c7272_387 | | 1008
|
| GMI_ES15_c7666_522 | | 1011
|
| GMI_ES15_c7719_163 | | 939
|
| GMI_ES15_c8064_341 | | 261
|
| GMI_ES15_c8191_415 | | 266
|
| GMI_ES15_c858_507 | | 1436
|
| GMI_ES15_c8655_387 | | 1344
|
| GMI_ES15_c8687_120 | | 630
|
| GMI_ES15_c8970_315 | | 414
|
| GMI_ES15_c9981_469 | | 925
|
| GMI_ES15_lrc12312_503 | | 607
|
| GMI_ES15_lrc19345_536 | | 486
|
| GMI_ES15_lrc19562_699 | | 1615
|
| GMI_ES17_c10073_640 | | 336
|
| GMI_ES17_c1186_142 | | 986
|
| GMI_ES17_c11978_361 | | 803
|
| GMI_ES17_c12067_507 | | 497
|
| GMI_ES17_c12203_326 | | 643
|
| GMI_ES17_c12284_305 | | 17
|
| GMI_ES17_c12316_291 | | 387
|
| GMI_ES17_c12516_818 | | 1500
|
| GMI_ES17_c12958_273 | | 1380
|
| GMI_ES17_c13128_254 | | 735
|
| GMI_ES17_c1365_216 | | 1006
|
| GMI_ES17_c13962_600 | | 1328
|
| GMI_ES17_c1429_455 | | 848
|
| GMI_ES17_c1488_898 | | 229
|
| GMI_ES17_c1620_564 | | 131
|
| GMI_ES17_c16539_472 | | 1891
|
| GMI_ES17_c1727_406 | | 808
|
| GMI_ES17_c17526_507 | | 1434
|
| GMI_ES17_c17558_304 | | 322
|
| GMI_ES17_c1779_644 | | 177
|
| GMI_ES17_c17993_168 | | 2911
|
| GMI_ES17_c18155_185 | | 725
|
| GMI_ES17_c19068_531 | | 1131
|
| GMI_ES17_c1918_529 | | 662
|
| GMI_ES17_c1926_571 | | 221
|
| GMI_ES17_c19385_93 | | 1508
|
| GMI_ES17_c20752_1084 | | 114
|
| GMI_ES17_c2251_283 | | 1126
|
| GMI_ES17_c2276_224 | | 630
|
| GMI_ES17_c2356_160 | | 629
|
| GMI_ES17_c244_1098 | | 140
|
| GMI_ES17_c2454_883 | | 138
|
| GMI_ES17_c2598_325 | | 885
|
| GMI_ES17_c2707_866 | | 322
|
| GMI_ES17_c2826_360 | | 661
|
| GMI_ES17_c3200_273 | | 555
|
| GMI_ES17_c327_972 | | 217
|
| GMI_ES17_c3291_859 | | 215
|
| GMI_ES17_c3309_96 | | 1348
|
| GMI_ES17_c3397_167 | | 2004
|
| GMI_ES17_c3418_95 | | 865
|
| GMI_ES17_c3807_825 | | 130
|
| GMI_ES17_c3808_324 | | 306
|
| GMI_ES17_c3844_181 | | 3543
|
| GMI_ES17_c3846_396 | | 2372
|
| GMI_ES17_c3969_600 | | 611
|
| GMI_ES17_c3975_209 | | 138
|
| GMI_ES17_c4051_315 | | 1389
|
| GMI_ES17_c4096_846 | | 941
|
| GMI_ES17_c4200_911 | | 227
|
| GMI_ES17_c4245_550 | | 666
|
| GMI_ES17_c4266_283 | | 268
|
| GMI_ES17_c4295_432 | | 1701
|
| GMI_ES17_c4515_297 | | 804
|
| GMI_ES17_c4663_648 | | 244
|
| GMI_ES17_c4700_516 | | 206
|
| GMI_ES17_c5169_555 | | 425
|
| GMI_ES17_c5637_152 | | 528
|
| GMI_ES17_c5666_258 | | 457
|
| GMI_ES17_c5762_827 | | 116
|
| GMI_ES17_c5832_342 | | 114
|
| GMI_ES17_c655_891 | | 1131
|
| GMI_ES17_c7160_500 | | 151
|
| GMI_ES17_c7296_694 | | 1406
|
| GMI_ES17_c7306_1002 | | 495
|
| GMI_ES17_c7323_831 | | 3886
|
| GMI_ES17_c7355_434 | | 854
|
| GMI_ES17_c786_412 | | 721
|
| GMI_ES17_c7997_871 | | 189
|
| GMI_ES17_c8066_237 | | 2692
|
| GMI_ES17_c8085_232 | | 925
|
| GMI_ES17_c8444_506 | | 227
|
| GMI_ES17_c8729_764 | | 769
|
| GMI_ES17_c8741_79 | | 500
|
| GMI_ES17_c882_882 | | 373
|
| GMI_ES17_c968_903 | | 135
|
| GMI_ES17_c9754_347 | | 282
|
| GMI_ES17_lrc11645_145 | | 624
|
| GMI_ES17_lrc19617_111 | | 595
|
| GMI_ES17_lrc20004_472 | | 1789
|
| GMI_ES17_lrc20311_707 | | 481
|
| GMI_ES17_lrc9623_475 | | 1722
|
| GMI_ES_CC10629_401 | | 208
|
| GMI_ES_CC10804_287 | |
|
| GMI_ES_CC10812_102 | | 557
|
| GMI_ES_CC10979_54 | |
|
| GMI_ES_CC11028_196 | | 493
|
| GMI_ES_CC11076_204 | | 614
|
| GMI_ES_CC11253_379 | | 1218
|
| GMI_ES_CC11271_65 | |
|
| GMI_ES_CC11826_84 | |
|
| GMI_ES_CC12468_66 | |
|
| GMI_ES_CC12765_141 | | 444
|
| GMI_ES_CC13637_173 | | 2711
|
| GMI_ES_CC13848_210 | | 2292
|
| GMI_ES_CC14261_141 | | 3099
|
| GMI_ES_CC14804_235 | | 2218
|
| GMI_ES_CC15057_51 | |
|
| GMI_ES_CC15133_247 | |
|
| GMI_ES_CC15389_69 | | 879
|
| GMI_ES_CC15404_67 | |
|
| GMI_ES_CC16289_111 | | 448
|
| GMI_ES_CC16445_119 | | 503
|
| GMI_ES_CC17674_57 | | 1561
|
| GMI_ES_CC18255_93 | |
|
| GMI_ES_CC2132_361 | | 441
|
| GMI_ES_CC2606_241 | | 584
|
| GMI_ES_CC2716_392 | | 145
|
| GMI_ES_CC3284_453 | | 101
|
| GMI_ES_CC3511_395 | | 318
|
| GMI_ES_CC3989_242 | | 1087
|
| GMI_ES_CC4354_296 | | 1838
|
| GMI_ES_CC4703_354 | | 1406
|
| GMI_ES_CC5758_340 | | 2810
|
| GMI_ES_CC6497_157 | | 568
|
| GMI_ES_CC6557_563 | |
|
| GMI_ES_CC6708_301 | | 490
|
| GMI_ES_CC7307_489 | |
|
| GMI_ES_CC7315_292 | | 346
|
| GMI_ES_CC7502_506 | | 225
|
| GMI_ES_CC7714_103 | | 631
|
| GMI_ES_CC7805_275 | | 369
|
| GMI_ES_CC8499_229 | | 585
|
| GMI_ES_CC8786_368 | | 1534
|
| GMI_ES_CC9362_188 | | 370
|
| GMI_ES_CC9431_260 | | 302
|
| GMI_ES_CC9730_217 | | 3228
|
| GMI_ES_CC9782_260 | | 405
|