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  T3/Oat

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment Oliver_2013_KANOTA/OGLE
Select link to view match in Ensembl Plant.

QueryReference Contigposition
GMI_DS_A3_151_2413008
GMI_DS_A3_169_546248
GMI_DS_A3_208_5994
GMI_DS_A3_289_88679
GMI_DS_A3_309_1241260
GMI_DS_A3_37_1431125
GMI_DS_A3_411_3982616
GMI_DS_CC10993_70216
GMI_DS_CC4033_368181
GMI_DS_CC4575_55931
GMI_DS_CC4885_61
GMI_DS_CC7482_102102
GMI_DS_CC7795_77204
GMI_DS_CC7798_52
GMI_DS_CC8041_85586
GMI_DS_CC8923_203158
GMI_DS_CC9060_1761643
GMI_DS_CC9187_14191
GMI_DS_CC9316_186
GMI_DS_CC9934_185513
GMI_DS_oPt-12037_92259
GMI_DS_oPt-13316_531705
GMI_DS_oPt-13382_233801
GMI_DS_oPt-14552_1011132
GMI_DS_oPt-16541_253349
GMI_DS_oPt-17564_425773
GMI_ES01_c10107_481400
GMI_ES01_c10147_214487
GMI_ES01_c10216_255321
GMI_ES01_c10419_1761231
GMI_ES01_c10525_271253
GMI_ES01_c10812_502450
GMI_ES01_c109_982605
GMI_ES01_c11004_5552561
GMI_ES01_c11070_7386
GMI_ES01_c11097_6202005
GMI_ES01_c11126_277331
GMI_ES01_c11175_5911625
GMI_ES01_c11287_335323
GMI_ES01_c11360_5092395
GMI_ES01_c11371_315323
GMI_ES01_c11420_274239
GMI_ES01_c11741_182452
GMI_ES01_c11777_1552031
GMI_ES01_c11782_595557
GMI_ES01_c11806_2611407
GMI_ES01_c11827_414365
GMI_ES01_c11874_1302815
GMI_ES01_c11895_354399
GMI_ES01_c11917_3561417
GMI_ES01_c11975_3221200
GMI_ES01_c12113_312525
GMI_ES01_c12117_562253
GMI_ES01_c1223_2001146
GMI_ES01_c12378_433221
GMI_ES01_c12443_4063869
GMI_ES01_c12489_104653
GMI_ES01_c12564_2102850
GMI_ES01_c12586_336298
GMI_ES01_c12749_2341325
GMI_ES01_c1287_580285
GMI_ES01_c12952_3491057
GMI_ES01_c1307_465767
GMI_ES01_c13113_1192147
GMI_ES01_c13250_2581740
GMI_ES01_c13299_168817
GMI_ES01_c13342_301652
GMI_ES01_c13391_7411352
GMI_ES01_c13403_1021450
GMI_ES01_c13432_1003056
GMI_ES01_c13446_14043
GMI_ES01_c13467_233231
GMI_ES01_c13478_81326
GMI_ES01_c13522_1401548
GMI_ES01_c13657_337287
GMI_ES01_c13820_382229
GMI_ES01_c13834_134659
GMI_ES01_c13907_1041285
GMI_ES01_c1394_726436
GMI_ES01_c14001_299249
GMI_ES01_c14065_1592402
GMI_ES01_c14084_302385
GMI_ES01_c14131_1734426
GMI_ES01_c14139_4981500
GMI_ES01_c14233_268101
GMI_ES01_c14397_365360
GMI_ES01_c14426_2381746
GMI_ES01_c1446_1061336
GMI_ES01_c14579_610586
GMI_ES01_c14629_208483
GMI_ES01_c14650_200487
GMI_ES01_c14673_653666
GMI_ES01_c1475_450101
GMI_ES01_c14767_240839
GMI_ES01_c1493_961012
GMI_ES01_c15012_10667
GMI_ES01_c1511_1015229
GMI_ES01_c15143_210418
GMI_ES01_c15158_404403
GMI_ES01_c1523_263193
GMI_ES01_c15252_1853544
GMI_ES01_c15405_389146
GMI_ES01_c15538_405352
GMI_ES01_c15628_381672
GMI_ES01_c15825_1432669
GMI_ES01_c15886_573181
GMI_ES01_c1608_6171834
GMI_ES01_c16132_303306
GMI_ES01_c16172_217543
GMI_ES01_c16180_205494
GMI_ES01_c16215_1861404
GMI_ES01_c16239_1431247
GMI_ES01_c16275_1041501
GMI_ES01_c16302_7583772
GMI_ES01_c16311_1102097
GMI_ES01_c16314_308167
GMI_ES01_c1635_3531011
GMI_ES01_c1638_1112035
GMI_ES01_c16437_198672
GMI_ES01_c16488_444402
GMI_ES01_c1649_355710
GMI_ES01_c16767_69548
GMI_ES01_c16901_225383
GMI_ES01_c16962_80355
GMI_ES01_c1700_379180
GMI_ES01_c17040_3942006
GMI_ES01_c17064_407979
GMI_ES01_c17183_318429
GMI_ES01_c17235_1441641
GMI_ES01_c1725_728605
GMI_ES01_c17319_464161
GMI_ES01_c17416_562609
GMI_ES01_c17476_92554
GMI_ES01_c17486_304300
GMI_ES01_c17597_189239
GMI_ES01_c17862_258944
GMI_ES01_c18017_440434
GMI_ES01_c1806_79937
GMI_ES01_c18101_861496
GMI_ES01_c18122_4041077
GMI_ES01_c18186_2364054
GMI_ES01_c18280_94119
GMI_ES01_c18545_4201593
GMI_ES01_c19245_178274
GMI_ES01_c19303_272105
GMI_ES01_c19480_5591289
GMI_ES01_c19845_199146
GMI_ES01_c2010_173489
GMI_ES01_c20367_331260
GMI_ES01_c20384_216494
GMI_ES01_c20639_752457
GMI_ES01_c20690_3013162
GMI_ES01_c20737_408790
GMI_ES01_c21239_1901317
GMI_ES01_c21280_2712217
GMI_ES01_c2150_256828
GMI_ES01_c21591_2671162
GMI_ES01_c21700_173519
GMI_ES01_c2201_1105537
GMI_ES01_c22540_100493
GMI_ES01_c22545_242301
GMI_ES01_c22619_1431178
GMI_ES01_c22998_155496
GMI_ES01_c23001_372325
GMI_ES01_c2304_49617
GMI_ES01_c2320_569324
GMI_ES01_c2338_2131205
GMI_ES01_c24051_67503
GMI_ES01_c24109_264352
GMI_ES01_c241_356265
GMI_ES01_c24402_384408
GMI_ES01_c24478_2091322
GMI_ES01_c24656_1051673
GMI_ES01_c24681_389422
GMI_ES01_c25127_1141617
GMI_ES01_c25270_712733
GMI_ES01_c25788_216714
GMI_ES01_c25884_1812500
GMI_ES01_c25986_126319
GMI_ES01_c26328_337298
GMI_ES01_c2642_449529
GMI_ES01_c26712_129950
GMI_ES01_c26749_466399
GMI_ES01_c27024_1572481
GMI_ES01_c27175_436308
GMI_ES01_c27293_196155
GMI_ES01_c27315_90579
GMI_ES01_c27468_2471565
GMI_ES01_c27535_582524
GMI_ES01_c27692_191159
GMI_ES01_c27869_512520
GMI_ES01_c284_1036293
GMI_ES01_c2878_533558
GMI_ES01_c2879_300348
GMI_ES01_c29631_331437
GMI_ES01_c3123_127587
GMI_ES01_c3178_185196
GMI_ES01_c3397_480326
GMI_ES01_c3447_952137
GMI_ES01_c3610_516714
GMI_ES01_c3759_3582406
GMI_ES01_c3800_204687
GMI_ES01_c3899_470440
GMI_ES01_c3919_841592
GMI_ES01_c3967_6031935
GMI_ES01_c4041_4231127
GMI_ES01_c4081_1821332
GMI_ES01_c4288_461566
GMI_ES01_c4371_166665
GMI_ES01_c4452_3251277
GMI_ES01_c4461_3692706
GMI_ES01_c4491_147477
GMI_ES01_c4520_307387
GMI_ES01_c461_1288157
GMI_ES01_c4774_1551586
GMI_ES01_c4929_437150
GMI_ES01_c5111_454958
GMI_ES01_c515_543520
GMI_ES01_c5419_407349
GMI_ES01_c5430_1793594
GMI_ES01_c5610_4341324
GMI_ES01_c5633_477310
GMI_ES01_c602_1381074
GMI_ES01_c626_629827
GMI_ES01_c6275_2031178
GMI_ES01_c6298_257241
GMI_ES01_c6385_358399
GMI_ES01_c6499_501349
GMI_ES01_c6574_3492502
GMI_ES01_c677_2231036
GMI_ES01_c6878_300496
GMI_ES01_c750_150521
GMI_ES01_c7872_667220
GMI_ES01_c791_10721001
GMI_ES01_c796_1801044
GMI_ES01_c7970_395207
GMI_ES01_c8015_409410
GMI_ES01_c8043_192540
GMI_ES01_c8121_663151
GMI_ES01_c8241_504341
GMI_ES01_c825_535917
GMI_ES01_c8301_93103
GMI_ES01_c8337_431490
GMI_ES01_c8343_342321
GMI_ES01_c8356_696852
GMI_ES01_c8411_252910
GMI_ES01_c8445_691119
GMI_ES01_c8470_599278
GMI_ES01_c8489_98909
GMI_ES01_c8527_320324
GMI_ES01_c8552_3371694
GMI_ES01_c8631_70863
GMI_ES01_c8716_2681691
GMI_ES01_c8813_209547
GMI_ES01_c8899_3241857
GMI_ES01_c9044_416294
GMI_ES01_c9159_4553435
GMI_ES01_c9160_206739
GMI_ES01_c9170_468410
GMI_ES01_c9254_706671
GMI_ES01_c9256_320264
GMI_ES01_c9384_567637
GMI_ES01_c9396_3383374
GMI_ES01_c9472_428255
GMI_ES01_c9544_263939
GMI_ES01_c9565_101501
GMI_ES01_c9569_299270
GMI_ES01_c9634_514333
GMI_ES01_c9910_1382707
GMI_ES01_c9954_347638
GMI_ES01_c9980_521966
GMI_ES01_lrc10725_434436
GMI_ES01_lrc10860_539255
GMI_ES01_lrc10967_551734
GMI_ES01_lrc11151_273283
GMI_ES01_lrc11702_525456
GMI_ES01_lrc12212_4201709
GMI_ES01_lrc12590_96268
GMI_ES01_lrc12621_1035519
GMI_ES01_lrc14087_138571
GMI_ES01_lrc16961_3531360
GMI_ES01_lrc17794_469760
GMI_ES01_lrc19995_311361
GMI_ES01_lrc22461_468572
GMI_ES01_lrc22746_3261565
GMI_ES01_lrc22977_5951091
GMI_ES01_lrc28828_382291
GMI_ES01_lrc29552_2121126
GMI_ES01_lrc7807_649154
GMI_ES01_lrc8208_4132297
GMI_ES01_lrc8457_6433
GMI_ES01_lrc8918_577189
GMI_ES01_lrc9332_388368
GMI_ES01_lrc9432_371315
GMI_ES01_lrc9501_3141735
GMI_ES01_lrc9906_553356
GMI_ES02_c10178_668203
GMI_ES02_c10381_213682
GMI_ES02_c10749_342746
GMI_ES02_c10836_312483
GMI_ES02_c10841_857318
GMI_ES02_c1165_7081164
GMI_ES02_c11747_563488
GMI_ES02_c11790_6132018
GMI_ES02_c11842_367259
GMI_ES02_c11874_484293
GMI_ES02_c11882_75436
GMI_ES02_c11888_2361894
GMI_ES02_c11913_3561729
GMI_ES02_c11918_1791878
GMI_ES02_c11937_146754
GMI_ES02_c12003_251513
GMI_ES02_c12034_866139
GMI_ES02_c12135_181772
GMI_ES02_c12254_159584
GMI_ES02_c12288_6951332
GMI_ES02_c12289_3813462
GMI_ES02_c12488_534297
GMI_ES02_c12578_377125
GMI_ES02_c12597_572577
GMI_ES02_c12598_2601442
GMI_ES02_c12621_204222
GMI_ES02_c1268_2131423
GMI_ES02_c12721_577174
GMI_ES02_c12737_306248
GMI_ES02_c12761_1833186
GMI_ES02_c12776_5331349
GMI_ES02_c12844_488157
GMI_ES02_c13068_3281331
GMI_ES02_c1312_1080307
GMI_ES02_c13135_7522895
GMI_ES02_c13152_4043011
GMI_ES02_c13203_413947
GMI_ES02_c13214_411794
GMI_ES02_c13236_1781013
GMI_ES02_c13356_599112
GMI_ES02_c13415_701804
GMI_ES02_c13433_326349
GMI_ES02_c13593_58189
GMI_ES02_c13596_1782239
GMI_ES02_c13726_298840
GMI_ES02_c13817_3111919
GMI_ES02_c13821_516547
GMI_ES02_c13889_164401
GMI_ES02_c14027_3562576
GMI_ES02_c14202_440599
GMI_ES02_c14323_362931
GMI_ES02_c14336_416618
GMI_ES02_c14415_127116
GMI_ES02_c14478_1541061
GMI_ES02_c14492_305252
GMI_ES02_c14497_585510
GMI_ES02_c14555_2171190
GMI_ES02_c14642_662102
GMI_ES02_c14677_4561086
GMI_ES02_c14927_4781847
GMI_ES02_c14986_166372
GMI_ES02_c14999_108654
GMI_ES02_c15089_1962492
GMI_ES02_c15112_271847
GMI_ES02_c15254_728275
GMI_ES02_c1528_799771
GMI_ES02_c15370_2691572
GMI_ES02_c15462_413353
GMI_ES02_c15481_563421
GMI_ES02_c15540_620797
GMI_ES02_c15617_183642
GMI_ES02_c15773_4481494
GMI_ES02_c15952_3482184
GMI_ES02_c15977_344238
GMI_ES02_c16096_626479
GMI_ES02_c16160_435645
GMI_ES02_c16266_250343
GMI_ES02_c16344_816125
GMI_ES02_c16345_539751
GMI_ES02_c16349_2942408
GMI_ES02_c1643_7921213
GMI_ES02_c16619_3191318
GMI_ES02_c16915_190503
GMI_ES02_c16931_154612
GMI_ES02_c16987_268373
GMI_ES02_c17110_444959
GMI_ES02_c17166_254632
GMI_ES02_c17191_397735
GMI_ES02_c17195_135300
GMI_ES02_c17364_288322
GMI_ES02_c17401_684864
GMI_ES02_c17403_291468
GMI_ES02_c17419_514486
GMI_ES02_c17568_31134
GMI_ES02_c17655_31677
GMI_ES02_c17758_221610
GMI_ES02_c17906_415337
GMI_ES02_c17921_986226
GMI_ES02_c17967_274310
GMI_ES02_c18027_226197
GMI_ES02_c18066_185491
GMI_ES02_c1819_259407
GMI_ES02_c18262_206704
GMI_ES02_c18291_3453540
GMI_ES02_c18621_282279
GMI_ES02_c18894_6682631
GMI_ES02_c18910_413226
GMI_ES02_c1895_125837
GMI_ES02_c19005_2231497
GMI_ES02_c19419_304418
GMI_ES02_c1946_2241763
GMI_ES02_c19599_2451176
GMI_ES02_c19663_3641112
GMI_ES02_c19731_191377
GMI_ES02_c19974_185430
GMI_ES02_c19985_503647
GMI_ES02_c19995_299238
GMI_ES02_c20004_642207
GMI_ES02_c20191_129563
GMI_ES02_c20360_3292562
GMI_ES02_c2053_415635
GMI_ES02_c20648_208266
GMI_ES02_c20678_948610
GMI_ES02_c21087_4871138
GMI_ES02_c2109_540792
GMI_ES02_c21128_184621
GMI_ES02_c21251_5091224
GMI_ES02_c21486_3951567
GMI_ES02_c21781_486135
GMI_ES02_c22081_495196
GMI_ES02_c22225_492142
GMI_ES02_c22291_3171197
GMI_ES02_c22314_179423
GMI_ES02_c22781_178875
GMI_ES02_c23066_496400
GMI_ES02_c23184_93485
GMI_ES02_c23328_252400
GMI_ES02_c23736_1661010
GMI_ES02_c23784_280101
GMI_ES02_c23934_563719
GMI_ES02_c2449_5521122
GMI_ES02_c24531_547249
GMI_ES02_c247_241165
GMI_ES02_c25162_4541760
GMI_ES02_c25254_139517
GMI_ES02_c25461_2771563
GMI_ES02_c2554_4261214
GMI_ES02_c26223_268349
GMI_ES02_c26303_356363
GMI_ES02_c2666_1246075
GMI_ES02_c27723_426300
GMI_ES02_c27762_671289
GMI_ES02_c27778_528510
GMI_ES02_c28150_198604
GMI_ES02_c28204_255101
GMI_ES02_c28616_430407
GMI_ES02_c28832_3081519
GMI_ES02_c2923_535216
GMI_ES02_c2959_310729
GMI_ES02_c3044_164358
GMI_ES02_c31310_407263
GMI_ES02_c3181_680134
GMI_ES02_c31937_212267
GMI_ES02_c3206_2931344
GMI_ES02_c3243_375373
GMI_ES02_c33014_195904
GMI_ES02_c3374_731160
GMI_ES02_c34493_2373121
GMI_ES02_c34690_199157
GMI_ES02_c34691_2362588
GMI_ES02_c34703_249250
GMI_ES02_c3481_3841214
GMI_ES02_c35002_504946
GMI_ES02_c35205_415753
GMI_ES02_c3531_401130
GMI_ES02_c35475_972147
GMI_ES02_c36026_284120
GMI_ES02_c3604_1542403
GMI_ES02_c36828_363101
GMI_ES02_c37387_234555
GMI_ES02_c37525_294261
GMI_ES02_c37740_106678
GMI_ES02_c38081_363299
GMI_ES02_c38199_367559
GMI_ES02_c38800_4181067
GMI_ES02_c3882_521425
GMI_ES02_c39098_920215
GMI_ES02_c4066_1651857
GMI_ES02_c4072_101549
GMI_ES02_c4080_192803
GMI_ES02_c4114_7602468
GMI_ES02_c4132_326750
GMI_ES02_c4268_6041671
GMI_ES02_c4277_7101784
GMI_ES02_c4494_659746
GMI_ES02_c4496_157136
GMI_ES02_c4509_295296
GMI_ES02_c4523_4271700
GMI_ES02_c4655_137757
GMI_ES02_c4756_5151721
GMI_ES02_c4822_1691429
GMI_ES02_c4865_190816
GMI_ES02_c4957_3001031
GMI_ES02_c501_285845
GMI_ES02_c5098_397726
GMI_ES02_c5884_318383
GMI_ES02_c6122_167593
GMI_ES02_c6368_605498
GMI_ES02_c6512_697467
GMI_ES02_c6639_153617
GMI_ES02_c6784_277345
GMI_ES02_c6920_143776
GMI_ES02_c7168_212536
GMI_ES02_c737_8021045
GMI_ES02_c7461_275303
GMI_ES02_c7632_3641007
GMI_ES02_c7694_423443
GMI_ES02_c7768_3182112
GMI_ES02_c8186_4431819
GMI_ES02_c8277_5061573
GMI_ES02_c8676_3602358
GMI_ES02_c911_58010
GMI_ES02_c939_180567
GMI_ES02_c9794_2692244
GMI_ES02_lrc12182_165126
GMI_ES02_lrc13446_328195
GMI_ES02_lrc13785_4332264
GMI_ES02_lrc13788_346193
GMI_ES02_lrc15461_492236
GMI_ES02_lrc15592_500416
GMI_ES02_lrc15970_136837
GMI_ES02_lrc16798_330350
GMI_ES02_lrc16943_552423
GMI_ES02_lrc17781_2342003
GMI_ES02_lrc18698_350145
GMI_ES02_lrc18911_1904123
GMI_ES02_lrc19497_391158
GMI_ES02_lrc20576_4051061
GMI_ES02_lrc24391_392420
GMI_ES02_lrc34335_153974
GMI_ES02_lrc37108_772151
GMI_ES02_lrc37417_28539
GMI_ES02_lrc37952_1061343
GMI_ES15_c10019_4311739
GMI_ES15_c10103_4191781
GMI_ES15_c10106_179470
GMI_ES15_c10203_2021009
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GMI_ES_CC12360_189333
GMI_ES_CC13348_93
GMI_ES_CC13394_332557
GMI_ES_CC13637_1732711
GMI_ES_CC13848_2102292
GMI_ES_CC13854_225528
GMI_ES_CC13970_83
GMI_ES_CC14261_1413099
GMI_ES_CC15237_1341826
GMI_ES_CC15860_1321460
GMI_ES_CC15898_66593
GMI_ES_CC16159_120429
GMI_ES_CC17647_179
GMI_ES_CC17674_571561
GMI_ES_CC2716_392145
GMI_ES_CC3511_395318
GMI_ES_CC3702_2891836
GMI_ES_CC3737_371401
GMI_ES_CC3989_2421087
GMI_ES_CC4005_62
GMI_ES_CC4354_2961838
GMI_ES_CC4504_192436
GMI_ES_CC4978_509276
GMI_ES_CC5758_3402810
GMI_ES_CC6279_474789
GMI_ES_CC6557_563
GMI_ES_CC6673_4601709
GMI_ES_CC7307_489
GMI_ES_CC7312_2861007
GMI_ES_CC7409_377523
GMI_ES_CC7714_103631
GMI_ES_CC7805_275369
GMI_ES_CC8351_255693
GMI_ES_CC8805_16110066
GMI_ES_CC8945_103770

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.