Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment Oliver_2013_HURDAL/Z-595-7
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position
|
| GMI_DS_CC9934_185 | | 570
|
| GMI_ES01_c11126_277 | | 275
|
| GMI_ES01_c11420_274 | | 61
|
| GMI_ES01_c11874_130 | | 2572
|
| GMI_ES01_c11895_354 | | 283
|
| GMI_ES01_c12117_562 | | 459
|
| GMI_ES01_c1223_200 | | 482
|
| GMI_ES01_c12378_433 | | 177
|
| GMI_ES01_c13467_233 | | 1145
|
| GMI_ES01_c13663_212 | | 272
|
| GMI_ES01_c14139_498 | | 1465
|
| GMI_ES01_c1475_450 | | 1443
|
| GMI_ES01_c1493_96 | | 560
|
| GMI_ES01_c15143_210 | | 222
|
| GMI_ES01_c15628_381 | | 1653
|
| GMI_ES01_c16132_303 | | 221
|
| GMI_ES01_c1635_353 | | 149
|
| GMI_ES01_c16767_69 | | 67
|
| GMI_ES01_c16774_222 | | 921
|
| GMI_ES01_c17040_394 | | 101
|
| GMI_ES01_c17319_464 | | 184
|
| GMI_ES01_c17486_304 | | 472
|
| GMI_ES01_c18839_132 | | 2044
|
| GMI_ES01_c21239_190 | | 318
|
| GMI_ES01_c21700_173 | | 425
|
| GMI_ES01_c2320_569 | | 210
|
| GMI_ES01_c2338_213 | | 1055
|
| GMI_ES01_c24681_389 | | 207
|
| GMI_ES01_c25788_216 | | 50
|
| GMI_ES01_c284_1036 | | 1391
|
| GMI_ES01_c2878_533 | | 574
|
| GMI_ES01_c2879_300 | | 1349
|
| GMI_ES01_c30278_240 | | 280
|
| GMI_ES01_c3327_180 | | 1473
|
| GMI_ES01_c3480_411 | | 139
|
| GMI_ES01_c3759_358 | | 321
|
| GMI_ES01_c4041_423 | | 994
|
| GMI_ES01_c4288_461 | | 972
|
| GMI_ES01_c4371_166 | | 186
|
| GMI_ES01_c4452_325 | | 1728
|
| GMI_ES01_c461_1288 | | 1469
|
| GMI_ES01_c5419_407 | | 1437
|
| GMI_ES01_c7940_496 | | 431
|
| GMI_ES01_c8356_696 | | 800
|
| GMI_ES01_c8470_599 | | 374
|
| GMI_ES01_c8527_320 | | 1036
|
| GMI_ES01_c9159_455 | | 403
|
| GMI_ES01_c9170_468 | | 237
|
| GMI_ES01_c9241_407 | | 428
|
| GMI_ES01_c9910_138 | | 741
|
| GMI_ES01_lrc10725_434 | | 166
|
| GMI_ES01_lrc13031_95 | | 144
|
| GMI_ES01_lrc28828_382 | | 480
|
| GMI_ES02_c11794_636 | | 1234
|
| GMI_ES02_c12598_260 | | 1394
|
| GMI_ES02_c12942_675 | | 748
|
| GMI_ES02_c13236_178 | | 206
|
| GMI_ES02_c13356_599 | | 1069
|
| GMI_ES02_c13415_701 | | 932
|
| GMI_ES02_c13433_326 | | 198
|
| GMI_ES02_c13596_178 | | 123
|
| GMI_ES02_c14180_257 | | 322
|
| GMI_ES02_c15112_271 | | 316
|
| GMI_ES02_c15617_183 | | 643
|
| GMI_ES02_c15652_109 | | 386
|
| GMI_ES02_c15898_126 | | 1711
|
| GMI_ES02_c15952_348 | | 485
|
| GMI_ES02_c16931_154 | | 555
|
| GMI_ES02_c17110_444 | | 928
|
| GMI_ES02_c17758_221 | | 217
|
| GMI_ES02_c17921_986 | | 179
|
| GMI_ES02_c18621_282 | | 182
|
| GMI_ES02_c1946_224 | | 879
|
| GMI_ES02_c20004_64 | | 228
|
| GMI_ES02_c20648_208 | | 219
|
| GMI_ES02_c21486_395 | | 356
|
| GMI_ES02_c2281_159 | | 1016
|
| GMI_ES02_c23179_274 | | 16
|
| GMI_ES02_c2449_552 | | 259
|
| GMI_ES02_c25461_277 | | 1376
|
| GMI_ES02_c26223_268 | | 4353
|
| GMI_ES02_c28204_255 | | 1202
|
| GMI_ES02_c28827_474 | | 851
|
| GMI_ES02_c28832_308 | | 421
|
| GMI_ES02_c3044_164 | | 244
|
| GMI_ES02_c31310_407 | | 1043
|
| GMI_ES02_c3181_680 | | 135
|
| GMI_ES02_c31937_212 | | 552
|
| GMI_ES02_c3243_375 | | 356
|
| GMI_ES02_c3374_73 | | 613
|
| GMI_ES02_c35031_175 | | 963
|
| GMI_ES02_c3577_672 | | 348
|
| GMI_ES02_c37368_176 | | 487
|
| GMI_ES02_c37525_294 | | 600
|
| GMI_ES02_c38444_270 | | 101
|
| GMI_ES02_c38800_418 | | 617
|
| GMI_ES02_c38960_346 | | 748
|
| GMI_ES02_c4066_165 | | 1228
|
| GMI_ES02_c4080_192 | | 225
|
| GMI_ES02_c4091_462 | | 305
|
| GMI_ES02_c4132_326 | | 1020
|
| GMI_ES02_c4268_604 | | 1712
|
| GMI_ES02_c4277_710 | | 185
|
| GMI_ES02_c4822_169 | | 1136
|
| GMI_ES02_c6122_167 | | 560
|
| GMI_ES02_c6368_605 | | 401
|
| GMI_ES02_c7238_473 | | 197
|
| GMI_ES02_c7694_423 | | 427
|
| GMI_ES02_c8034_282 | | 159
|
| GMI_ES02_c8186_443 | | 91
|
| GMI_ES02_c8298_599 | | 291
|
| GMI_ES02_c8845_199 | | 186
|
| GMI_ES02_c939_180 | | 260
|
| GMI_ES02_lrc16798_330 | | 1054
|
| GMI_ES02_lrc17781_234 | | 166
|
| GMI_ES02_lrc20483_468 | | 513
|
| GMI_ES02_lrc34335_153 | | 1227
|
| GMI_ES02_lrc37378_471 | | 229
|
| GMI_ES15_c10106_179 | | 799
|
| GMI_ES15_c10680_325 | | 745
|
| GMI_ES15_c112_624 | | 1060
|
| GMI_ES15_c1186_140 | | 553
|
| GMI_ES15_c12108_368 | | 339
|
| GMI_ES15_c12355_287 | | 318
|
| GMI_ES15_c13434_347 | | 284
|
| GMI_ES15_c13526_397 | | 211
|
| GMI_ES15_c13888_212 | | 1083
|
| GMI_ES15_c14817_204 | | 232
|
| GMI_ES15_c1558_249 | | 104
|
| GMI_ES15_c16679_330 | | 352
|
| GMI_ES15_c1710_467 | | 1266
|
| GMI_ES15_c17486_204 | | 531
|
| GMI_ES15_c1855_452 | | 236
|
| GMI_ES15_c19375_143 | | 419
|
| GMI_ES15_c20302_110 | | 541
|
| GMI_ES15_c2110_730 | | 76
|
| GMI_ES15_c2193_426 | | 2017
|
| GMI_ES15_c2358_404 | | 203
|
| GMI_ES15_c2369_181 | | 404
|
| GMI_ES15_c2451_165 | | 226
|
| GMI_ES15_c285_271 | | 459
|
| GMI_ES15_c3200_563 | | 562
|
| GMI_ES15_c3362_506 | | 1193
|
| GMI_ES15_c3706_138 | | 395
|
| GMI_ES15_c3806_357 | | 302
|
| GMI_ES15_c3903_463 | | 1149
|
| GMI_ES15_c4017_310 | | 362
|
| GMI_ES15_c4231_158 | | 2443
|
| GMI_ES15_c4463_508 | | 1975
|
| GMI_ES15_c482_113 | | 270
|
| GMI_ES15_c5441_439 | | 63
|
| GMI_ES15_c5451_344 | | 295
|
| GMI_ES15_c5554_377 | | 64
|
| GMI_ES15_c5951_364 | | 2812
|
| GMI_ES15_c605_638 | | 1653
|
| GMI_ES15_c6392_93 | | 892
|
| GMI_ES15_c6435_299 | | 1162
|
| GMI_ES15_c6587_292 | | 1357
|
| GMI_ES15_c6822_337 | | 310
|
| GMI_ES15_c7196_299 | | 364
|
| GMI_ES15_c7272_387 | | 198
|
| GMI_ES15_c7666_522 | | 490
|
| GMI_ES15_c8238_156 | | 664
|
| GMI_ES15_c8803_430 | | 276
|
| GMI_ES15_c8970_315 | | 359
|
| GMI_ES15_c9068_311 | | 1149
|
| GMI_ES15_lrc12312_503 | | 428
|
| GMI_ES17_c10183_548 | | 628
|
| GMI_ES17_c10770_123 | | 262
|
| GMI_ES17_c1086_770 | | 304
|
| GMI_ES17_c10921_231 | | 986
|
| GMI_ES17_c10984_690 | | 429
|
| GMI_ES17_c11262_129 | | 292
|
| GMI_ES17_c11886_143 | | 138
|
| GMI_ES17_c1205_213 | | 1716
|
| GMI_ES17_c12075_354 | | 284
|
| GMI_ES17_c12284_305 | | 656
|
| GMI_ES17_c12316_291 | | 67
|
| GMI_ES17_c12385_157 | | 931
|
| GMI_ES17_c12492_273 | | 513
|
| GMI_ES17_c125_448 | | 803
|
| GMI_ES17_c12869_484 | | 391
|
| GMI_ES17_c12954_551 | | 314
|
| GMI_ES17_c12958_273 | | 804
|
| GMI_ES17_c13128_254 | | 82
|
| GMI_ES17_c1365_216 | | 930
|
| GMI_ES17_c14126_105 | | 603
|
| GMI_ES17_c1482_118 | | 283
|
| GMI_ES17_c1618_519 | | 298
|
| GMI_ES17_c1620_564 | | 402
|
| GMI_ES17_c17467_410 | | 316
|
| GMI_ES17_c17781_268 | | 246
|
| GMI_ES17_c18155_185 | | 183
|
| GMI_ES17_c19062_191 | | 1229
|
| GMI_ES17_c19385_93 | | 278
|
| GMI_ES17_c19709_452 | | 1036
|
| GMI_ES17_c20215_324 | | 332
|
| GMI_ES17_c2063_243 | | 304
|
| GMI_ES17_c20652_599 | | 441
|
| GMI_ES17_c20660_396 | | 676
|
| GMI_ES17_c21168_588 | | 606
|
| GMI_ES17_c2137_336 | | 690
|
| GMI_ES17_c2183_936 | | 55
|
| GMI_ES17_c2359_369 | | 1459
|
| GMI_ES17_c2398_610 | | 277
|
| GMI_ES17_c2707_866 | | 316
|
| GMI_ES17_c2766_159 | | 145
|
| GMI_ES17_c2976_706 | | 275
|
| GMI_ES17_c3038_487 | | 460
|
| GMI_ES17_c3079_602 | | 452
|
| GMI_ES17_c3195_668 | | 1225
|
| GMI_ES17_c3218_276 | | 583
|
| GMI_ES17_c3291_859 | | 2115
|
| GMI_ES17_c3309_96 | | 790
|
| GMI_ES17_c3486_177 | | 418
|
| GMI_ES17_c3668_729 | | 1280
|
| GMI_ES17_c3693_421 | | 367
|
| GMI_ES17_c3807_825 | | 1278
|
| GMI_ES17_c3808_324 | | 71
|
| GMI_ES17_c3855_760 | | 717
|
| GMI_ES17_c4047_127 | | 604
|
| GMI_ES17_c4223_141 | | 115
|
| GMI_ES17_c4241_356 | | 988
|
| GMI_ES17_c4268_554 | | 2192
|
| GMI_ES17_c4475_475 | | 1460
|
| GMI_ES17_c4498_222 | | 1051
|
| GMI_ES17_c4515_297 | | 497
|
| GMI_ES17_c4663_648 | | 1139
|
| GMI_ES17_c467_205 | | 637
|
| GMI_ES17_c4730_358 | | 495
|
| GMI_ES17_c4821_368 | | 418
|
| GMI_ES17_c4863_294 | | 446
|
| GMI_ES17_c4979_427 | | 361
|
| GMI_ES17_c5049_177 | | 628
|
| GMI_ES17_c5162_445 | | 232
|
| GMI_ES17_c5176_558 | | 449
|
| GMI_ES17_c5197_503 | | 351
|
| GMI_ES17_c528_116 | | 129
|
| GMI_ES17_c5367_259 | | 833
|
| GMI_ES17_c5744_689 | | 2148
|
| GMI_ES17_c6299_272 | | 93
|
| GMI_ES17_c653_546 | | 112
|
| GMI_ES17_c655_891 | | 1053
|
| GMI_ES17_c6857_627 | | 506
|
| GMI_ES17_c7296_694 | | 352
|
| GMI_ES17_c7306_1002 | | 159
|
| GMI_ES17_c7387_367 | | 183
|
| GMI_ES17_c7424_271 | | 389
|
| GMI_ES17_c766_770 | | 1069
|
| GMI_ES17_c793_567 | | 624
|
| GMI_ES17_c7967_247 | | 477
|
| GMI_ES17_c7984_356 | | 727
|
| GMI_ES17_c8090_201 | | 553
|
| GMI_ES17_c8136_792 | | 243
|
| GMI_ES17_c8741_79 | | 664
|
| GMI_ES17_c8843_580 | | 2322
|
| GMI_ES17_c8906_512 | | 300
|
| GMI_ES17_c9652_803 | | 866
|
| GMI_ES17_lrc20172_521 | | 1024
|
| GMI_ES17_lrc7334_312 | | 468
|
| GMI_ES_CC10804_287 | |
|
| GMI_ES_CC11019_290 | | 803
|
| GMI_ES_CC11658_395 | | 510
|
| GMI_ES_CC12360_189 | | 555
|
| GMI_ES_CC14616_68 | |
|
| GMI_ES_CC15860_132 | | 927
|
| GMI_ES_CC15898_66 | | 331
|
| GMI_ES_CC16445_119 | | 423
|
| GMI_ES_CC16529_138 | | 419
|
| GMI_ES_CC17647_179 | |
|
| GMI_ES_CC2716_392 | | 1189
|
| GMI_ES_CC3989_242 | | 520
|
| GMI_ES_CC4005_62 | |
|
| GMI_ES_CC4504_192 | | 1122
|
| GMI_ES_CC4978_509 | | 372
|
| GMI_ES_CC6279_474 | | 506
|
| GMI_ES_CC6708_301 | | 424
|
| GMI_ES_CC8351_255 | | 696
|
| GMI_ES_CC8700_285 | | 307
|
| GMI_ES_CC9362_188 | | 731
|
| GMI_ES_CC9431_260 | | 291
|
| GMI_ES_CC9730_217 | | 404
|