Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment Oliver_2013_HURDAL/Z-595-7
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position
|
| GMI_DS_CC4430_239 | |
|
| GMI_DS_CC4575_55 | | 931
|
| GMI_DS_CC5684_99 | | 6955
|
| GMI_DS_CC7482_102 | | 102
|
| GMI_DS_CC9187_141 | | 91
|
| GMI_DS_CC9934_185 | | 513
|
| GMI_DS_oPt-16541_253 | | 349
|
| GMI_ES01_c11126_277 | | 331
|
| GMI_ES01_c11420_274 | | 239
|
| GMI_ES01_c11874_130 | | 2815
|
| GMI_ES01_c11895_354 | | 399
|
| GMI_ES01_c12117_562 | | 253
|
| GMI_ES01_c1223_200 | | 1146
|
| GMI_ES01_c12378_433 | | 221
|
| GMI_ES01_c12564_210 | | 2850
|
| GMI_ES01_c12749_234 | | 1325
|
| GMI_ES01_c12952_349 | | 1057
|
| GMI_ES01_c13467_233 | | 231
|
| GMI_ES01_c13663_212 | | 254
|
| GMI_ES01_c13820_382 | | 229
|
| GMI_ES01_c14084_302 | | 385
|
| GMI_ES01_c14139_498 | | 1500
|
| GMI_ES01_c14233_268 | | 101
|
| GMI_ES01_c1475_450 | | 101
|
| GMI_ES01_c1493_96 | | 1012
|
| GMI_ES01_c15143_210 | | 418
|
| GMI_ES01_c1523_263 | | 193
|
| GMI_ES01_c15628_381 | | 672
|
| GMI_ES01_c15886_573 | | 181
|
| GMI_ES01_c16132_303 | | 306
|
| GMI_ES01_c16314_308 | | 167
|
| GMI_ES01_c1635_353 | | 1011
|
| GMI_ES01_c16767_69 | | 548
|
| GMI_ES01_c16774_222 | | 1063
|
| GMI_ES01_c17040_394 | | 2006
|
| GMI_ES01_c17319_464 | | 161
|
| GMI_ES01_c17486_304 | | 300
|
| GMI_ES01_c17597_189 | | 239
|
| GMI_ES01_c18839_132 | | 74
|
| GMI_ES01_c21239_190 | | 1317
|
| GMI_ES01_c21700_173 | | 519
|
| GMI_ES01_c22619_143 | | 1178
|
| GMI_ES01_c2320_569 | | 324
|
| GMI_ES01_c2338_213 | | 1205
|
| GMI_ES01_c24681_389 | | 422
|
| GMI_ES01_c25788_216 | | 714
|
| GMI_ES01_c25986_126 | | 319
|
| GMI_ES01_c26749_466 | | 399
|
| GMI_ES01_c284_1036 | | 293
|
| GMI_ES01_c2878_533 | | 558
|
| GMI_ES01_c2879_300 | | 348
|
| GMI_ES01_c3178_185 | | 196
|
| GMI_ES01_c3759_358 | | 2406
|
| GMI_ES01_c4041_423 | | 1127
|
| GMI_ES01_c4288_461 | | 566
|
| GMI_ES01_c4371_166 | | 665
|
| GMI_ES01_c4452_325 | | 1277
|
| GMI_ES01_c4491_147 | | 477
|
| GMI_ES01_c461_1288 | | 157
|
| GMI_ES01_c4774_155 | | 1586
|
| GMI_ES01_c5419_407 | | 349
|
| GMI_ES01_c8301_93 | | 103
|
| GMI_ES01_c8356_696 | | 852
|
| GMI_ES01_c8470_599 | | 278
|
| GMI_ES01_c8527_320 | | 324
|
| GMI_ES01_c8716_268 | | 1691
|
| GMI_ES01_c9159_455 | | 3435
|
| GMI_ES01_c9170_468 | | 410
|
| GMI_ES01_c9236_115 | | 154
|
| GMI_ES01_c9910_138 | | 2707
|
| GMI_ES01_lrc10725_434 | | 436
|
| GMI_ES01_lrc22746_326 | | 1565
|
| GMI_ES01_lrc28828_382 | | 291
|
| GMI_ES01_lrc8208_413 | | 2297
|
| GMI_ES01_lrc9332_388 | | 368
|
| GMI_ES02_c10381_213 | | 682
|
| GMI_ES02_c10749_342 | | 746
|
| GMI_ES02_c11794_636 | | 607
|
| GMI_ES02_c11888_236 | | 1894
|
| GMI_ES02_c12254_159 | | 584
|
| GMI_ES02_c12488_534 | | 297
|
| GMI_ES02_c12598_260 | | 1442
|
| GMI_ES02_c12621_204 | | 222
|
| GMI_ES02_c12844_488 | | 157
|
| GMI_ES02_c1312_1080 | | 307
|
| GMI_ES02_c13236_178 | | 1013
|
| GMI_ES02_c13356_599 | | 112
|
| GMI_ES02_c13415_701 | | 804
|
| GMI_ES02_c13433_326 | | 349
|
| GMI_ES02_c13596_178 | | 2239
|
| GMI_ES02_c14180_257 | | 338
|
| GMI_ES02_c14492_305 | | 252
|
| GMI_ES02_c14497_585 | | 510
|
| GMI_ES02_c15112_271 | | 847
|
| GMI_ES02_c15617_183 | | 642
|
| GMI_ES02_c15652_109 | | 742
|
| GMI_ES02_c15952_348 | | 2184
|
| GMI_ES02_c16931_154 | | 612
|
| GMI_ES02_c17110_444 | | 959
|
| GMI_ES02_c17758_221 | | 610
|
| GMI_ES02_c17921_986 | | 226
|
| GMI_ES02_c18621_282 | | 279
|
| GMI_ES02_c1946_224 | | 1763
|
| GMI_ES02_c19995_299 | | 238
|
| GMI_ES02_c20004_64 | | 2207
|
| GMI_ES02_c20648_208 | | 266
|
| GMI_ES02_c21486_395 | | 1567
|
| GMI_ES02_c21781_486 | | 135
|
| GMI_ES02_c2281_159 | | 132
|
| GMI_ES02_c23179_274 | | 842
|
| GMI_ES02_c2449_552 | | 1122
|
| GMI_ES02_c25461_277 | | 1563
|
| GMI_ES02_c26223_268 | | 349
|
| GMI_ES02_c27778_528 | | 510
|
| GMI_ES02_c28204_255 | | 101
|
| GMI_ES02_c28832_308 | | 1519
|
| GMI_ES02_c3044_164 | | 358
|
| GMI_ES02_c31310_407 | | 263
|
| GMI_ES02_c3181_680 | | 134
|
| GMI_ES02_c31937_212 | | 267
|
| GMI_ES02_c3243_375 | | 373
|
| GMI_ES02_c3374_73 | | 1160
|
| GMI_ES02_c35475_97 | | 2147
|
| GMI_ES02_c3604_154 | | 2403
|
| GMI_ES02_c36828_363 | | 101
|
| GMI_ES02_c37368_176 | | 1025
|
| GMI_ES02_c37525_294 | | 261
|
| GMI_ES02_c38444_270 | | 224
|
| GMI_ES02_c38800_418 | | 1067
|
| GMI_ES02_c38960_346 | | 641
|
| GMI_ES02_c4066_165 | | 1857
|
| GMI_ES02_c4080_192 | | 803
|
| GMI_ES02_c4132_326 | | 750
|
| GMI_ES02_c4268_604 | | 1671
|
| GMI_ES02_c4277_710 | | 1784
|
| GMI_ES02_c4822_169 | | 1429
|
| GMI_ES02_c6122_167 | | 593
|
| GMI_ES02_c6368_605 | | 498
|
| GMI_ES02_c7238_473 | | 576
|
| GMI_ES02_c7461_275 | | 303
|
| GMI_ES02_c7694_423 | | 443
|
| GMI_ES02_c8186_443 | | 1819
|
| GMI_ES02_c8298_599 | | 302
|
| GMI_ES02_c8845_199 | | 165
|
| GMI_ES02_c911_580 | | 10
|
| GMI_ES02_c939_180 | | 567
|
| GMI_ES02_lrc13785_433 | | 2264
|
| GMI_ES02_lrc16798_330 | | 350
|
| GMI_ES02_lrc17781_234 | | 2003
|
| GMI_ES02_lrc18911_190 | | 4123
|
| GMI_ES02_lrc34335_153 | | 974
|
| GMI_ES02_lrc37108_772 | | 151
|
| GMI_ES02_lrc37378_471 | | 219
|
| GMI_ES15_c10103_419 | | 1781
|
| GMI_ES15_c10106_179 | | 470
|
| GMI_ES15_c10388_464 | | 101
|
| GMI_ES15_c10680_325 | | 1130
|
| GMI_ES15_c112_624 | | 455
|
| GMI_ES15_c11428_323 | | 430
|
| GMI_ES15_c1186_140 | | 677
|
| GMI_ES15_c12355_287 | | 1341
|
| GMI_ES15_c12436_395 | | 199
|
| GMI_ES15_c12694_287 | | 833
|
| GMI_ES15_c13434_347 | | 200
|
| GMI_ES15_c13519_202 | | 426
|
| GMI_ES15_c13526_397 | | 215
|
| GMI_ES15_c13674_329 | | 400
|
| GMI_ES15_c13888_212 | | 1144
|
| GMI_ES15_c14817_204 | | 799
|
| GMI_ES15_c1558_249 | | 1172
|
| GMI_ES15_c15766_421 | | 746
|
| GMI_ES15_c16679_330 | | 1164
|
| GMI_ES15_c1710_467 | | 431
|
| GMI_ES15_c17486_204 | | 765
|
| GMI_ES15_c1855_452 | | 251
|
| GMI_ES15_c19375_143 | | 961
|
| GMI_ES15_c20302_110 | | 658
|
| GMI_ES15_c2110_730 | | 178
|
| GMI_ES15_c2193_426 | | 479
|
| GMI_ES15_c2369_181 | | 735
|
| GMI_ES15_c2451_165 | | 1645
|
| GMI_ES15_c285_271 | | 789
|
| GMI_ES15_c2996_540 | | 102
|
| GMI_ES15_c3200_563 | | 122
|
| GMI_ES15_c3706_138 | | 630
|
| GMI_ES15_c3806_357 | | 720
|
| GMI_ES15_c3903_463 | | 287
|
| GMI_ES15_c4017_310 | | 102
|
| GMI_ES15_c4231_158 | | 573
|
| GMI_ES15_c4387_160 | | 134
|
| GMI_ES15_c4567_646 | | 256
|
| GMI_ES15_c482_113 | | 670
|
| GMI_ES15_c5125_136 | | 180
|
| GMI_ES15_c5385_383 | | 1578
|
| GMI_ES15_c5441_439 | | 1432
|
| GMI_ES15_c5554_377 | | 348
|
| GMI_ES15_c5627_595 | | 179
|
| GMI_ES15_c5951_364 | | 4196
|
| GMI_ES15_c5973_311 | | 3545
|
| GMI_ES15_c6392_93 | | 896
|
| GMI_ES15_c6435_299 | | 640
|
| GMI_ES15_c6587_292 | | 1481
|
| GMI_ES15_c6822_337 | | 143
|
| GMI_ES15_c6925_619 | | 217
|
| GMI_ES15_c7196_299 | | 393
|
| GMI_ES15_c7272_387 | | 1008
|
| GMI_ES15_c7654_479 | | 365
|
| GMI_ES15_c7666_522 | | 1011
|
| GMI_ES15_c8238_156 | | 574
|
| GMI_ES15_c8389_147 | | 777
|
| GMI_ES15_c8687_120 | | 630
|
| GMI_ES15_c8803_430 | | 1373
|
| GMI_ES15_c8970_315 | | 414
|
| GMI_ES15_c9068_311 | | 445
|
| GMI_ES15_c9085_462 | | 293
|
| GMI_ES15_lrc12312_503 | | 607
|
| GMI_ES17_c10183_548 | | 1487
|
| GMI_ES17_c10593_508 | | 1124
|
| GMI_ES17_c10770_123 | | 770
|
| GMI_ES17_c1086_770 | | 281
|
| GMI_ES17_c10921_231 | | 482
|
| GMI_ES17_c10984_690 | | 426
|
| GMI_ES17_c11262_129 | | 489
|
| GMI_ES17_c11863_355 | | 336
|
| GMI_ES17_c11886_143 | | 678
|
| GMI_ES17_c1205_213 | | 1577
|
| GMI_ES17_c12075_354 | | 306
|
| GMI_ES17_c12284_305 | | 17
|
| GMI_ES17_c12316_291 | | 387
|
| GMI_ES17_c12385_157 | | 1027
|
| GMI_ES17_c12492_273 | | 2923
|
| GMI_ES17_c125_448 | | 947
|
| GMI_ES17_c12869_484 | | 106
|
| GMI_ES17_c1288_844 | | 1178
|
| GMI_ES17_c12954_551 | | 597
|
| GMI_ES17_c12958_273 | | 1380
|
| GMI_ES17_c13128_254 | | 735
|
| GMI_ES17_c13450_151 | | 2420
|
| GMI_ES17_c1365_216 | | 1006
|
| GMI_ES17_c14126_105 | | 3448
|
| GMI_ES17_c14163_394 | | 434
|
| GMI_ES17_c1482_118 | | 625
|
| GMI_ES17_c1618_519 | | 1146
|
| GMI_ES17_c1620_564 | | 131
|
| GMI_ES17_c17442_334 | | 1426
|
| GMI_ES17_c17467_410 | | 1211
|
| GMI_ES17_c17781_268 | | 5916
|
| GMI_ES17_c18155_185 | | 725
|
| GMI_ES17_c18781_74 | | 1275
|
| GMI_ES17_c19062_191 | | 1286
|
| GMI_ES17_c1926_571 | | 221
|
| GMI_ES17_c19385_93 | | 1508
|
| GMI_ES17_c19709_452 | | 666
|
| GMI_ES17_c20215_324 | | 47
|
| GMI_ES17_c2063_243 | | 611
|
| GMI_ES17_c20660_396 | | 569
|
| GMI_ES17_c21168_588 | | 256
|
| GMI_ES17_c2122_619 | | 331
|
| GMI_ES17_c2137_336 | | 626
|
| GMI_ES17_c2183_936 | | 1348
|
| GMI_ES17_c2359_369 | | 419
|
| GMI_ES17_c2398_610 | | 386
|
| GMI_ES17_c2669_776 | | 120
|
| GMI_ES17_c2707_866 | | 322
|
| GMI_ES17_c2766_159 | | 294
|
| GMI_ES17_c3038_487 | | 921
|
| GMI_ES17_c3079_602 | | 1702
|
| GMI_ES17_c3195_668 | | 1089
|
| GMI_ES17_c3218_276 | | 261
|
| GMI_ES17_c3291_859 | | 215
|
| GMI_ES17_c3309_96 | | 1348
|
| GMI_ES17_c3418_95 | | 865
|
| GMI_ES17_c3486_177 | | 559
|
| GMI_ES17_c3574_637 | | 1522
|
| GMI_ES17_c3625_404 | | 163
|
| GMI_ES17_c3668_729 | | 1562
|
| GMI_ES17_c3693_421 | | 231
|
| GMI_ES17_c3807_825 | | 130
|
| GMI_ES17_c3808_324 | | 306
|
| GMI_ES17_c3855_760 | | 1487
|
| GMI_ES17_c4047_127 | | 2969
|
| GMI_ES17_c4200_911 | | 227
|
| GMI_ES17_c4223_141 | | 1479
|
| GMI_ES17_c4241_356 | | 256
|
| GMI_ES17_c4268_554 | | 2529
|
| GMI_ES17_c4475_475 | | 1665
|
| GMI_ES17_c4498_222 | | 1286
|
| GMI_ES17_c4515_297 | | 804
|
| GMI_ES17_c4663_648 | | 244
|
| GMI_ES17_c467_205 | | 759
|
| GMI_ES17_c4730_358 | | 2158
|
| GMI_ES17_c4821_368 | | 323
|
| GMI_ES17_c4863_294 | | 1809
|
| GMI_ES17_c4979_427 | | 706
|
| GMI_ES17_c5049_177 | | 2778
|
| GMI_ES17_c5169_555 | | 425
|
| GMI_ES17_c5176_558 | | 516
|
| GMI_ES17_c5197_503 | | 1431
|
| GMI_ES17_c528_116 | | 705
|
| GMI_ES17_c5744_689 | | 382
|
| GMI_ES17_c5762_827 | | 116
|
| GMI_ES17_c6299_272 | | 1191
|
| GMI_ES17_c653_546 | | 1090
|
| GMI_ES17_c655_891 | | 1131
|
| GMI_ES17_c6857_627 | | 429
|
| GMI_ES17_c7296_694 | | 1406
|
| GMI_ES17_c7306_1002 | | 495
|
| GMI_ES17_c7387_367 | | 4202
|
| GMI_ES17_c7424_271 | | 502
|
| GMI_ES17_c766_770 | | 338
|
| GMI_ES17_c7736_565 | | 1155
|
| GMI_ES17_c793_567 | | 1405
|
| GMI_ES17_c7967_247 | | 535
|
| GMI_ES17_c8090_201 | | 656
|
| GMI_ES17_c8136_792 | | 289
|
| GMI_ES17_c8444_506 | | 227
|
| GMI_ES17_c8741_79 | | 500
|
| GMI_ES17_c8843_580 | | 411
|
| GMI_ES17_c8906_512 | | 670
|
| GMI_ES17_c9448_286 | | 384
|
| GMI_ES17_c9625_419 | | 1895
|
| GMI_ES17_c9652_803 | | 106
|
| GMI_ES17_c9754_347 | | 282
|
| GMI_ES17_lrc11645_145 | | 624
|
| GMI_ES17_lrc20172_521 | | 2045
|
| GMI_ES17_lrc20311_707 | | 481
|
| GMI_ES17_lrc7334_312 | | 1090
|
| GMI_ES_CC10804_287 | |
|
| GMI_ES_CC11019_290 | | 470
|
| GMI_ES_CC11253_379 | | 1218
|
| GMI_ES_CC11621_230 | | 1533
|
| GMI_ES_CC11658_395 | | 2527
|
| GMI_ES_CC11933_314 | | 238
|
| GMI_ES_CC12360_189 | | 333
|
| GMI_ES_CC12907_107 | | 424
|
| GMI_ES_CC13348_93 | |
|
| GMI_ES_CC13637_173 | | 2711
|
| GMI_ES_CC13854_225 | | 528
|
| GMI_ES_CC13970_83 | |
|
| GMI_ES_CC14616_68 | |
|
| GMI_ES_CC15237_134 | | 1826
|
| GMI_ES_CC15860_132 | | 1460
|
| GMI_ES_CC15898_66 | | 593
|
| GMI_ES_CC16159_120 | | 429
|
| GMI_ES_CC16445_119 | | 503
|
| GMI_ES_CC17647_179 | |
|
| GMI_ES_CC2606_241 | | 584
|
| GMI_ES_CC2716_392 | | 145
|
| GMI_ES_CC3284_453 | | 101
|
| GMI_ES_CC3737_371 | | 401
|
| GMI_ES_CC3989_242 | | 1087
|
| GMI_ES_CC4005_62 | |
|
| GMI_ES_CC4504_192 | | 436
|
| GMI_ES_CC4978_509 | | 276
|
| GMI_ES_CC6279_474 | | 789
|
| GMI_ES_CC6557_563 | |
|
| GMI_ES_CC6708_301 | | 490
|
| GMI_ES_CC7307_489 | |
|
| GMI_ES_CC7315_292 | | 346
|
| GMI_ES_CC8351_255 | | 693
|
| GMI_ES_CC8927_168 | | 495
|
| GMI_ES_CC9362_188 | | 370
|
| GMI_ES_CC9431_260 | | 302
|
| GMI_ES_CC9730_217 | | 3228
|