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  T3/Oat

Marker Annotation Report

This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.

Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".

BLAST matches for experiment CORE_2014_GBS
Select link to view match in Ensembl Plant.

QueryReference Contigposition
avgbs_1076791496
avgbs_108690716
avgbs_112650349
avgbs_1188711668
avgbs_122977155
avgbs_200596590
avgbs_200603479
avgbs_202643219
avgbs_203529742
avgbs_204334577
avgbs_20469470
avgbs_2051161159
avgbs_205455550
avgbs_205781567
avgbs_206088747
avgbs_206798476
avgbs_207584552
avgbs_207759159
avgbs_21329399
avgbs_2134481132
avgbs_213718614
avgbs_213853347
avgbs_214945326
avgbs_215178634
avgbs_215189520
avgbs_215476655
avgbs_215741943
avgbs_21597073
avgbs_218324213
avgbs_21914455
avgbs_2194552149
avgbs_220563217
avgbs_221748626
avgbs_221886220
avgbs_222517116
avgbs_222755341
avgbs_22330350
avgbs_224017886
avgbs_224315257
avgbs_2246221792
avgbs_225320137
avgbs_2257161662
avgbs_228534660
avgbs_231256235
avgbs_2319992023
avgbs_232654407
avgbs_238425163
avgbs_241421416
avgbs_24187182
avgbs_257231125
avgbs_283097352
avgbs_28412219
avgbs_28715123
avgbs_29098077
avgbs_29529789
avgbs_295360516
avgbs_302787245
avgbs_3044671492
avgbs_307666475
avgbs_309129373
avgbs_309364424
avgbs_30961359
avgbs_309678414
avgbs_3101441465
avgbs_310765450
avgbs_311152153
avgbs_3112183131
avgbs_32286249
avgbs_371281242
avgbs_3844431414
avgbs_3872101605
avgbs_387389126
avgbs_38749250
avgbs_397197174
avgbs_412015166
avgbs_41238871
avgbs_41442606
avgbs_428950341
avgbs_438341169
avgbs_43951672
avgbs_45582637
avgbs_4676841740
avgbs_47924120
avgbs_498688401
avgbs_50766340
avgbs_511502823
avgbs_5239044
avgbs_5510821624
avgbs_558937456
avgbs_562687668
avgbs_56402166
avgbs_573455832
avgbs_573779189
avgbs_580916124
avgbs_59206169
avgbs_6404167
avgbs_69916122
avgbs_6K_14193732
avgbs_6K_17731646
avgbs_6K_18083168
avgbs_6K_240591903
avgbs_6K_68515437
avgbs_6K_91152643
avgbs_72739768
avgbs_74831204
avgbs_74959861
avgbs_768591902
avgbs_7838276
avgbs_8015255
avgbs_85200928
avgbs_8660724
avgbs_90467156
avgbs_9101365
avgbs_93637420
avgbs_96016398

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.