Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.
The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment CORE_2014_GBS
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position
|
| avgbs_100096 | | 1355
|
| avgbs_102807 | | 133
|
| avgbs_103211 | | 81
|
| avgbs_103414 | | 362
|
| avgbs_104400 | | 1113
|
| avgbs_107679 | | 269
|
| avgbs_108690 | | 1297
|
| avgbs_11165 | | 175
|
| avgbs_112650 | | 868
|
| avgbs_115148 | | 1960
|
| avgbs_11527 | | 228
|
| avgbs_116653 | | 1108
|
| avgbs_11803 | | 157
|
| avgbs_11844 | | 142
|
| avgbs_118522 | | 1413
|
| avgbs_118871 | | 1773
|
| avgbs_119048 | | 1850
|
| avgbs_122132 | | 1347
|
| avgbs_122457 | | 553
|
| avgbs_122977 | | 111
|
| avgbs_12328 | | 117
|
| avgbs_123336 | | 1249
|
| avgbs_124961 | | 1004
|
| avgbs_126020 | | 133
|
| avgbs_12978 | | 248
|
| avgbs_1475 | | 514
|
| avgbs_17299 | | 307
|
| avgbs_17392 | | 158
|
| avgbs_19549 | | 2664
|
| avgbs_200106 | | 711
|
| avgbs_200172 | | 765
|
| avgbs_200174 | | 189
|
| avgbs_200216 | | 344
|
| avgbs_200327 | | 1695
|
| avgbs_200562 | | 283
|
| avgbs_200569 | | 230
|
| avgbs_200578 | | 965
|
| avgbs_201220 | | 516
|
| avgbs_201595 | | 761
|
| avgbs_201718 | | 347
|
| avgbs_201909 | | 920
|
| avgbs_202281 | | 665
|
| avgbs_202631 | | 309
|
| avgbs_202643 | | 484
|
| avgbs_202748 | | 395
|
| avgbs_203313 | | 342
|
| avgbs_203348 | | 1400
|
| avgbs_203370 | | 383
|
| avgbs_203407 | | 428
|
| avgbs_203414 | | 143
|
| avgbs_203529 | | 1359
|
| avgbs_203603 | | 552
|
| avgbs_203776 | | 34
|
| avgbs_203934 | | 159
|
| avgbs_20398 | | 738
|
| avgbs_204213 | | 369
|
| avgbs_204265 | | 208
|
| avgbs_204334 | | 935
|
| avgbs_204370 | | 394
|
| avgbs_204388 | | 1460
|
| avgbs_204560 | | 267
|
| avgbs_204694 | | 734
|
| avgbs_204699 | | 549
|
| avgbs_204769 | | 1032
|
| avgbs_204808 | | 2106
|
| avgbs_205035 | | 1486
|
| avgbs_205062 | | 755
|
| avgbs_205111 | | 177
|
| avgbs_205116 | | 1136
|
| avgbs_205272 | | 340
|
| avgbs_205445 | | 109
|
| avgbs_205455 | | 2405
|
| avgbs_205524 | | 351
|
| avgbs_205781 | | 1889
|
| avgbs_205795 | | 868
|
| avgbs_205821 | | 718
|
| avgbs_205822 | | 753
|
| avgbs_205839 | | 321
|
| avgbs_205917 | | 792
|
| avgbs_206211 | | 3283
|
| avgbs_206226 | | 1060
|
| avgbs_206798 | | 1468
|
| avgbs_207584 | | 621
|
| avgbs_207757 | | 176
|
| avgbs_207759 | | 206
|
| avgbs_208392 | | 420
|
| avgbs_21292 | | 4144
|
| avgbs_213213 | | 2063
|
| avgbs_213306 | | 1400
|
| avgbs_213448 | | 1606
|
| avgbs_213470 | | 235
|
| avgbs_213531 | | 597
|
| avgbs_213571 | | 2663
|
| avgbs_213693 | | 226
|
| avgbs_213742 | | 278
|
| avgbs_213853 | | 347
|
| avgbs_213898 | | 1625
|
| avgbs_214271 | | 3390
|
| avgbs_214366 | | 884
|
| avgbs_214484 | | 609
|
| avgbs_214491 | | 475
|
| avgbs_214534 | | 627
|
| avgbs_215170 | | 79
|
| avgbs_215189 | | 1351
|
| avgbs_215268 | | 572
|
| avgbs_215355 | | 74
|
| avgbs_215422 | | 461
|
| avgbs_215476 | | 264
|
| avgbs_215640 | | 158
|
| avgbs_215655 | | 1236
|
| avgbs_215706 | | 183
|
| avgbs_21574 | | 626
|
| avgbs_215774 | | 1126
|
| avgbs_215781 | | 201
|
| avgbs_215931 | | 1129
|
| avgbs_215970 | | 620
|
| avgbs_216035 | | 134
|
| avgbs_216122 | | 2570
|
| avgbs_216378 | | 1084
|
| avgbs_216380 | | 416
|
| avgbs_216483 | | 233
|
| avgbs_216626 | | 178
|
| avgbs_216735 | | 3582
|
| avgbs_216816 | | 3025
|
| avgbs_216837 | | 381
|
| avgbs_216908 | | 418
|
| avgbs_217069 | | 4745
|
| avgbs_217181 | | 106
|
| avgbs_217240 | | 293
|
| avgbs_217617 | | 125
|
| avgbs_217690 | | 41
|
| avgbs_217831 | | 173
|
| avgbs_218023 | | 377
|
| avgbs_218244 | | 371
|
| avgbs_218324 | | 253
|
| avgbs_218420 | | 2888
|
| avgbs_218463 | | 251
|
| avgbs_218908 | | 1005
|
| avgbs_218915 | | 352
|
| avgbs_219144 | | 692
|
| avgbs_219317 | | 937
|
| avgbs_219428 | | 88
|
| avgbs_219455 | | 372
|
| avgbs_219704 | | 1402
|
| avgbs_219996 | | 4054
|
| avgbs_220419 | | 634
|
| avgbs_220540 | | 1092
|
| avgbs_220551 | | 225
|
| avgbs_220563 | | 2544
|
| avgbs_220835 | | 404
|
| avgbs_221224 | | 1737
|
| avgbs_221361 | | 343
|
| avgbs_221383 | | 153
|
| avgbs_221421 | | 1630
|
| avgbs_221458 | | 331
|
| avgbs_221547 | | 139
|
| avgbs_221594 | | 267
|
| avgbs_221667 | | 733
|
| avgbs_221748 | | 650
|
| avgbs_221827 | | 2284
|
| avgbs_221963 | | 86
|
| avgbs_221967 | | 845
|
| avgbs_222517 | | 656
|
| avgbs_222755 | | 846
|
| avgbs_222788 | | 812
|
| avgbs_222813 | | 126
|
| avgbs_222818 | | 526
|
| avgbs_223032 | | 1800
|
| avgbs_223034 | | 363
|
| avgbs_223303 | | 5762
|
| avgbs_223321 | | 1475
|
| avgbs_223524 | | 660
|
| avgbs_223527 | | 176
|
| avgbs_223661 | | 684
|
| avgbs_223781 | | 1911
|
| avgbs_223880 | | 240
|
| avgbs_224293 | | 482
|
| avgbs_224315 | | 1690
|
| avgbs_224622 | | 1357
|
| avgbs_224639 | | 684
|
| avgbs_224789 | | 914
|
| avgbs_224821 | | 75
|
| avgbs_224924 | | 376
|
| avgbs_224973 | | 47
|
| avgbs_224974 | | 377
|
| avgbs_225366 | | 561
|
| avgbs_225512 | | 1139
|
| avgbs_225618 | | 400
|
| avgbs_225637 | | 149
|
| avgbs_225664 | | 307
|
| avgbs_225715 | | 26
|
| avgbs_225716 | | 1972
|
| avgbs_225729 | | 295
|
| avgbs_225746 | | 244
|
| avgbs_226379 | | 764
|
| avgbs_22716 | | 424
|
| avgbs_229220 | | 1391
|
| avgbs_229931 | | 733
|
| avgbs_231023 | | 1318
|
| avgbs_231163 | | 703
|
| avgbs_231256 | | 3218
|
| avgbs_231728 | | 926
|
| avgbs_231999 | | 1478
|
| avgbs_232654 | | 434
|
| avgbs_235064 | | 215
|
| avgbs_23535 | | 992
|
| avgbs_235447 | | 3162
|
| avgbs_237653 | | 1814
|
| avgbs_237753 | | 80
|
| avgbs_238425 | | 861
|
| avgbs_238649 | | 1568
|
| avgbs_239477 | | 117
|
| avgbs_241421 | | 380
|
| avgbs_24186 | | 159
|
| avgbs_244481 | | 1013
|
| avgbs_25876 | | 116
|
| avgbs_26227 | | 260
|
| avgbs_279099 | | 329
|
| avgbs_28071 | | 1865
|
| avgbs_281201 | | 89
|
| avgbs_283097 | | 502
|
| avgbs_28412 | | 1104
|
| avgbs_2849 | | 106
|
| avgbs_286368 | | 1343
|
| avgbs_28715 | | 165
|
| avgbs_287866 | | 636
|
| avgbs_288442 | | 61
|
| avgbs_288811 | | 1256
|
| avgbs_290980 | | 600
|
| avgbs_294488 | | 14
|
| avgbs_295297 | | 1190
|
| avgbs_302787 | | 1843
|
| avgbs_305837 | | 48
|
| avgbs_307666 | | 757
|
| avgbs_309097 | | 897
|
| avgbs_309129 | | 878
|
| avgbs_309364 | | 363
|
| avgbs_309382 | | 227
|
| avgbs_309446 | | 2030
|
| avgbs_309589 | | 170
|
| avgbs_309678 | | 2221
|
| avgbs_309878 | | 831
|
| avgbs_309925 | | 536
|
| avgbs_309999 | | 246
|
| avgbs_310144 | | 1358
|
| avgbs_310228 | | 224
|
| avgbs_310576 | | 91
|
| avgbs_310738 | | 864
|
| avgbs_310905 | | 2939
|
| avgbs_310966 | | 2378
|
| avgbs_310978 | | 91
|
| avgbs_311058 | | 1384
|
| avgbs_311152 | | 1137
|
| avgbs_311218 | | 3614
|
| avgbs_31976 | | 662
|
| avgbs_32286 | | 291
|
| avgbs_32810 | | 658
|
| avgbs_3327 | | 1025
|
| avgbs_35541 | | 186
|
| avgbs_383800 | | 443
|
| avgbs_384443 | | 485
|
| avgbs_385605 | | 1082
|
| avgbs_386684 | | 363
|
| avgbs_386921 | | 222
|
| avgbs_387210 | | 1880
|
| avgbs_387389 | | 206
|
| avgbs_387492 | | 1691
|
| avgbs_391937 | | 159
|
| avgbs_392026 | | 976
|
| avgbs_394643 | | 2412
|
| avgbs_39651 | | 113
|
| avgbs_397197 | | 1215
|
| avgbs_397333 | | 1139
|
| avgbs_398548 | | 37
|
| avgbs_398923 | | 295
|
| avgbs_398954 | | 1497
|
| avgbs_399743 | | 913
|
| avgbs_399955 | | 1137
|
| avgbs_402877 | | 409
|
| avgbs_404373 | | 1775
|
| avgbs_404954 | | 1292
|
| avgbs_405382 | | 408
|
| avgbs_406245 | | 317
|
| avgbs_406983 | | 1440
|
| avgbs_407595 | | 424
|
| avgbs_408178 | | 514
|
| avgbs_409033 | | 1166
|
| avgbs_410135 | | 132
|
| avgbs_410642 | | 59
|
| avgbs_412388 | | 1610
|
| avgbs_412484 | | 901
|
| avgbs_414109 | | 395
|
| avgbs_41442 | | 1015
|
| avgbs_424603 | | 3541
|
| avgbs_428950 | | 344
|
| avgbs_42915 | | 419
|
| avgbs_4337 | | 231
|
| avgbs_433911 | | 284
|
| avgbs_438341 | | 591
|
| avgbs_43951 | | 209
|
| avgbs_455826 | | 612
|
| avgbs_456547 | | 693
|
| avgbs_458642 | | 213
|
| avgbs_460668 | | 410
|
| avgbs_4656 | | 229
|
| avgbs_467240 | | 1235
|
| avgbs_467684 | | 3170
|
| avgbs_47924 | | 899
|
| avgbs_4842 | | 175
|
| avgbs_49309 | | 1139
|
| avgbs_498688 | | 1280
|
| avgbs_50766 | | 270
|
| avgbs_51108 | | 494
|
| avgbs_51138 | | 50
|
| avgbs_511502 | | 924
|
| avgbs_515262 | | 587
|
| avgbs_52386 | | 713
|
| avgbs_52390 | | 567
|
| avgbs_533685 | | 461
|
| avgbs_550520 | | 1956
|
| avgbs_551082 | | 442
|
| avgbs_553059 | | 1282
|
| avgbs_558937 | | 538
|
| avgbs_562687 | | 510
|
| avgbs_56402 | | 2147
|
| avgbs_565519 | | 1252
|
| avgbs_56897 | | 185
|
| avgbs_571257 | | 454
|
| avgbs_573455 | | 320
|
| avgbs_573779 | | 693
|
| avgbs_57500 | | 629
|
| avgbs_577628 | | 116
|
| avgbs_579935 | | 264
|
| avgbs_585654 | | 89
|
| avgbs_587818 | | 498
|
| avgbs_69916 | | 137
|
| avgbs_6993 | | 277
|
| avgbs_6K_14193 | | 667
|
| avgbs_6K_14643 | | 187
|
| avgbs_6K_18083 | | 596
|
| avgbs_6K_24059 | | 2391
|
| avgbs_6K_4358 | | 45
|
| avgbs_6K_6901 | | 2126
|
| avgbs_6K_73277 | | 1205
|
| avgbs_6K_81876 | | 1618
|
| avgbs_6K_91152 | | 915
|
| avgbs_6K_92817 | | 261
|
| avgbs_6K_96887 | | 157
|
| avgbs_72198 | | 789
|
| avgbs_72420 | | 1941
|
| avgbs_72739 | | 1412
|
| avgbs_7385 | | 458
|
| avgbs_73961 | | 123
|
| avgbs_74831 | | 1511
|
| avgbs_74959 | | 1049
|
| avgbs_75139 | | 577
|
| avgbs_76637 | | 57
|
| avgbs_78763 | | 380
|
| avgbs_79975 | | 401
|
| avgbs_80152 | | 121
|
| avgbs_81298 | | 379
|
| avgbs_82064 | | 197
|
| avgbs_82119 | | 487
|
| avgbs_82125 | | 1537
|
| avgbs_83264 | | 1600
|
| avgbs_84808 | | 105
|
| avgbs_84839 | | 2073
|
| avgbs_85200 | | 294
|
| avgbs_8660 | | 1823
|
| avgbs_87424 | | 834
|
| avgbs_88791 | | 192
|
| avgbs_90467 | | 189
|
| avgbs_91013 | | 68
|
| avgbs_9294 | | 261
|
| avgbs_93546 | | 315
|
| avgbs_95095 | | 241
|
| avgbs_95940 | | 1015
|
| avgbs_96016 | | 2817
|
| avgbs_96174 | | 890
|
| GMI_GBS_105147 | | 1952
|
| GMI_GBS_70801 | | 1510
|
| GMI_GBS_78313 | | 179
|
| GMI_GBS_97971 | | 154
|