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Genotyping experiment POGI_2017


Experiment Short NamePOGI_2017
PlatformGBS PstI-MspI
Data ProgramUSDA-ARS Fargo: data (FND-GD)
Breeding ProgramUSDA (USD)
OPA Namen/a
Processing Daten/a
Software version2016_02
CommentsSNPs interpreted from haplotype calls. SNP locations are arbitrary - please link to the latest map of GBS markers.

239612 markers were assayed for 564 lines.

(lines and markers)


Removed by filteringRemaining
91134 markers have a minor allele frequency (MAF) less than 5%
188120 markers are missing more than 10% of data
204682 markers removed
34930 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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