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Genotyping experiment POGI_2015_UCDavis


Experiment Short NamePublic Oat Genotyping Initiative
PlatformGBS PstI-MspI
Data ProgramUSDA-ARS Fargo: data (FND-GD)
Breeding ProgramUniversity of California Davis (UCD)
OPA Namen/a
Processing Date2/17/16
Software version2016_02
CommentsSNPs interpreted from haplotype calls

240023 markers were assayed for 96 lines.

(lines and markers)


Removed by filteringRemaining
84943 markers have a minor allele frequency (MAF) less than 5%
197608 markers are missing more than 10% of data
208088 markers removed
33124 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data1_UCD_SNPgeno.hmp.txt

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.