Genotyping experiment POGI_2015_SDSU
Description
| Experiment Short Name | Public Oat Genotyping Initiative |
| Platform | GBS PstI-MspI |
| Data Program | USDA-ARS Fargo: data (FND-GD) |
| Breeding Program | South Dakota State University (SDS) |
| OPA Name | n/a |
| Processing Date | 2/17/16 |
| Software | Haplotag |
| Software version | 2016_02 |
| Comments | SNPs interpreted from haplotype calls |
240106 markers were assayed for 285 lines.
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| Removed by filtering | Remaining |
| 128196 markers have a minor allele frequency (MAF) less than 5%
189047 markers are missing more than 10% of data 214037 markers removed | 27174 markers |
Maximum Missing Data: %
Minimum MAF: %
Additional files available
| Samples (germplasm lines) | |
| Manifest (markers used) | |
| Cluster File | |
| Raw data | 3_SDS_SNPgeno.hmp.txt |