Genotyping experiment POGI_2015_ENCORE
Description
| Experiment Short Name | Public Oat Genotyping Initiative |
| Platform | GBS PstI-MspI |
| Data Program | USDA-ARS Fargo: data (FND-GD) |
| Breeding Program | AAFC Ottawa (OTW) |
| OPA Name | n/a |
| Processing Date | 2/17/16 |
| Software | Haplotag |
| Software version | 2016_02 |
| Comments | SNPs interpreted from haplotype calls |
239909 markers were assayed for 283 lines.
Download
| Removed by filtering | Remaining |
| 99609 markers have a minor allele frequency (MAF) less than 5%
192225 markers are missing more than 10% of data 210482 markers removed | 30727 markers |
Maximum Missing Data: %
Minimum MAF: %
Additional files available
| Samples (germplasm lines) | |
| Manifest (markers used) | |
| Cluster File | |
| Raw data | 7_ENCORE_SNPgeno.hmp.txt |