Genotyping experiment Oliver_2013_OTANA/PI260616
Description
| Experiment Short Name | Oliver_OP |
| Platform | Golden Gate OPA |
| Data Program | USDA-ARS Fargo: data (FND-GD) |
| Breeding Program | AAFC Ottawa, ON-CAN: mapping (OTW-M) |
| OPA Name | OOPA1 |
| Processing Date | 2011 |
| Software | Illumina Genome Studio |
| Software version | 2011.1 |
| Comments | Original SNP scores for oat population OTANA/PI260616 as published in Oliver RE, Tinker NA, Lazo GR, et al. SNP Discovery and Chromosome Anchoring Provide the First Physically-Anchored Hexaploid Oat Map and Reveal Synteny with Model Species. Xu M, ed. PLoS ONE. 2013;8(3):e58068. Note: progeny OP-57, OP-64, OP-97, OP-106, OP-109, OP-111, OP-123, and OP-124 were dropped from the data for quality reasons during mapping. OPOOPA1 was a legacy platform that led to the oat 6K Infinium assay. |
475 markers were assayed for 100 lines.
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| Removed by filtering | Remaining |
| 6 markers have a minor allele frequency (MAF) less than 5%
8 markers are missing more than 10% of data 9 markers removed | 466 markers |
Maximum Missing Data: %
Minimum MAF: %
Additional files available
| Samples (germplasm lines) | |
| Manifest (markers used) | |
| Cluster File | |
| Raw data |