Genotyping experiment CORE_2014_GBS
Description
| Experiment Short Name | CORE_GBS |
| Platform | HiSeq |
| Data Program | AAFC Ottawa: genotype data (OTW-GD) |
| Breeding Program | Unknown (UNK) |
| OPA Name | n/a |
| Processing Date | 5/3/15 |
| Software | TASSEL/UNEAK |
| Software version | 3 |
| Comments | GBS data called by UNEAK on 635 CORE diversity lines, filtered at >= 95% completeness, >= 1% MAF, >= 5% heterozygous. |
2635 markers were assayed for 635 lines.
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| Removed by filtering | Remaining |
| 821 markers have a minor allele frequency (MAF) less than 5%
0 markers are missing more than 10% of data 821 markers removed | 1814 markers |
Maximum Missing Data: %
Minimum MAF: %
Additional files available
| Samples (germplasm lines) | |
| Manifest (markers used) | |
| Cluster File | |
| Raw data |