T3/Oat

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What's New

Analysis
BLAST Oat Genome Assembly

Genotype Data

Data from the 2019 Public Oat Genotyping Initiative (POGI) is now available.

Download Genotype and Phenotype Data

Download selected data for use in external analysis programs (TASSEL, rrBLUP, Flapjack, synbreed)

Phenotype and Consensus Genotype data
1. Select a set of Lines, Traits, and Trials.
2. Select a genetic map which has the best coverage for your selection.

Phenotype and Single Experiment Genotype data
1. Select a set of Lines by Genotype Experiment.
2. Select a genetic map which has the best coverage for your selection.

Phenotype Genotype consensus Genotype single experiment

Lines
none selected

Markers
All

Traits
none selected

Trials
none selected

This table lists the total markers in each map. If a marker is not in the the selected map set then it will be assigned to chromosome 0.

select	markers (total)	map name	comment (mouse over item for complete text)
	7202	Framework Oat Consensus Map (2016)	Oat consensus map composed of 6K SNP array markers and PstI-MspI-GBS markers, developed by merging 1
	1914	Kanota x Ogle (2015)	A de-novo genetic linkage map of Kanota x Ogle (KO) that was used in the construction of the Hexaplo
	888	CDC Sol-Fi x HiFi (2015)	A de-novo genetic linkage map of CDC Sol-Fi x HiFi (CH, historically SH) that was used in the constr
	1508	Hurdal x Z-597 (2015)	A de-novo genetic linkage map of Hurdal x Z-597 (HZ) that was used in the construction of the Hexapl
	2257	Ogle x TAMO-301 (2015)	A de-novo genetic linkage map of Ogle x TAMO-301 (OT) that was used in the construction of the Hexap
	660	CDC Boyer x 94197A1-9-2-2-5 (2015)	A de-novo genetic linkage map of CDC Boyer x 94197A1-9-2-2-5 (BG, historically GB) that was used in
	1166	Otana x PI260616 (2015)	A de-novo genetic linkage map of Otana x PI260616 (OP) that was used in the construction of the Hexa
	1821	Provena x 94197A1-9-2-2-5 (2015)	A de-novo genetic linkage map of Provena x 94197A1-9-2-2-5 (PG) that was used in the construction of
	623	IL86-1156 x Clintland 64 (2015)	A de-novo genetic linkage map of IL86-1156 x Clintland 64 (IL4) that was used in the construction of
	598	Provena x CDC Boyer (2015)	A de-novo genetic linkage map of Provena x CDC Boyer (PB) that was used in the construction of the H
	895	Dal x Exeter (2015)	A de-novo genetic linkage map of Dal x Exeter (DE) that was used in the construction of the Hexaploi
	1366	AC Assiniboia x MN841801 (2015)	A de-novo genetic linkage map of AC Assiniboia x MN841801 (AM) that was used in the construction of
	608	IL86-6404 x Clintland 64 (2015)	A de-novo genetic linkage map of IL86-6404 x Clintland 64 (IL5) that was used in the construction of
	99835	Oat Consensus Map (2018)	Consensus map from 4657 accessions of cultivated oat. See “Haplotype‐based genotyping‐by‐seq
	156527	PepsiCo 2019	A physical map using BLAST and the markers in T3

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.