- Data templates are Excel, .txt, or .csv worksheets with column headers for the data T3 requires or accepts.
- The example values can be replaced with your own. Notes about the restrictions for valid data are included in the templates.
- Once populated, the files can be loaded into T3 using the Curate menu, which is available to registered Sandbox users.
- To make updates or corrections, edit your file and reload.
- Please use the wheat
or barley Funnyfarm database
for test-loading your files. When they're ready,
click here to submit them to the T3 Curator for loading into the official database.
T3 Lesson1 LineUpload
T3 Lesson2 Phenotype
T3 Lesson2 Phenotype~
T3 Lesson2 Phenotype
T3 Lesson2 Phenotype2012
T3 Lesson2 Phenotype old
T3 Lesson3 GenotypeUpload
T3 Lesson3 GenotypeUpload~
T3 Line Panels
T3 line panels
|Germplasm Lines||Wheat||24Apr15||Name, synonyms, pedigree for wheat|
|Barley||11Dec14||Name, synonyms, pedigree for barley|
|Genetic Characters||13Aug14||Genes, QTLs, trait-linked markers, market class|
|Name conversion macros||29Sep11||Excel spreadsheet to convert germplasm names to T3 formatted names.|
|Phenotyping||Traits||13Feb13||Please discuss with the curators before adding a new trait.|
|Trial description||04Dec12||Location, planting date, experimental design...|
|Trial means||03Dec15||Values for all traits for test lines and checks, summary statistics|
|Plot-Level Results||22Jul13||Trait values for each plot|
|CSR System||15Feb13||Instrument annotation||CSR description||27Feb13||Description of the CSR experiment|
|CSR results||02Jan13||Data file format|
|Genotyping||Experiment description||13Sep13||Platform, software, manifest file, experiment details...|
|Line translation||17Apr12||Line Name and Trial Code|
|Illumina data||03Jan13||alleles for lines and markers (coded as A or B)|
|GBS data||11Apr14||alleles for lines and markers (coded as ACTG, N = missing, H = heterozygous)|
|GBS data, over 100K markers||07Nov14||instructions for loading large GBS data sets using the command line|
|DArT data||20Jun13||alleles for lines and markers (coded as 1 = present, 0 = absent)|
|Experiment results (1D)||16Sep11||1D table of alleles for lines and markers|
|Markers||Sequence Generic||21Feb14||Marker sequences and allele definitions|
|Sequence Illumina OPA||16Sep11||Markers from Illumina Manifest, Golden Gate OPA format|
|Sequence Illumina Infinium||21Aug12||Markers from Illumina Manifest, Infinium HD format|
|Markers from DArT||17Jun13||Markers from Diversity Array Technologies|
|Gene function||25Oct11||Sequence annotations and name synonyms|
|Genetic Character markers||11Dec14||Trait-linked markers named for their associated gene or QTL|
|Map location||16Sep11||Genetic maps|
In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing.
Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis.
Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.
I agree to the Data Usage Policy as specified in Toronto Statement.