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  BD Barley

Data Submission

  • Data templates are Excel, .txt, or .csv worksheets with column headers for the data T3 requires or accepts.
  • The example values can be replaced with your own. Notes about the restrictions for valid data are included in the templates.
  • Once populated, the files can be loaded into T3 using the Curate menu, which is available to registered Sandbox users.
  • To make updates or corrections, edit your file and reload.
  • Please use the wheat or barley Sandbox database for test-loading your files. When they're ready, click here to submit them to the T3 Curator for loading into the official database.

Instructions - Rules for filling in the templates, and sequence of submission
T3 Lesson1 LineUpload
T3 Lesson2 Phenotype
T3 Lesson2 Phenotype~
T3 Lesson2 Phenotype
T3 Lesson2 Phenotype2012
T3 Lesson2 Phenotype old
T3 Lesson3 GenotypeUpload
T3 Lesson3 GenotypeUpload~
T3 Line Panels
T3 line panels
Tutorial1 Register Login
Tutorial2 Line Submission
Tutorial3 Creating line panels
Tutorial4 Phenotype data
Tutorial5 Uploading Marker information
Tutorial6 Creating Marker Panels
Tutorial7 Genotype Experiments and Data
Tutorial8 T3 and Android FieldBook

Data Templates

Topic Link Modified Contents
Germplasm Lines Wheat06Nov17 Name, synonyms, pedigree for wheat
Barley24Jun16 Name, synonyms, pedigree for barley
Oat20Oct17 Name, synonyms, pedigree for oat
Genetic Characters24Jun16 Genes, QTLs, trait-linked markers, market class
Name conversion macros24Jun16 Excel spreadsheet to convert germplasm names to T3 formatted names.
Phenotyping Traits24Jun16 Please discuss with the curators before adding a new trait.
Trial description24Jun16 Location, planting date, experimental design...
Trial means24Jun16 Values for all traits for test lines and checks, summary statistics
Plot-Level Results24Jun16 Trait values for each plot
Fieldbook24Jun16 Field map
Canopy Spectral
CSR System24Jun16 Instrument annotation
CSR description24Jun16 Description of the CSR experiment
CSR results24Jun16 Data file format
Genotyping Experiment description24Jun16 Platform, software, manifest file, experiment details...
Line translation24Jun16 Line Name and Trial Code
Illumina data24Jun16 alleles for lines and markers (coded as A or B)
GBS data24Jun16 alleles for lines and markers (coded as ACTG, N = missing, H = heterozygous)
GBS data, over 100K markers07Nov14 instructions for loading large GBS data sets using the command line
DArT data24Jun16 alleles for lines and markers (coded as 1 = present, 0 = absent)
Experiment results (1D)24Jun16 1D table of alleles for lines and markers
Markers Sequence Generic24Jun16 Marker sequences and allele definitions
Sequence Illumina OPA24Jun16 Markers from Illumina Manifest, Golden Gate OPA format
Sequence Illumina Infinium24Jun16 Markers from Illumina Manifest, Infinium HD format
Markers from DArT24Jun16 Markers from Diversity Array Technologies
Gene function24Jun16 Sequence annotations and name synonyms
Genetic Character markers24Jun16 Trait-linked markers named for their associated gene or QTL
Map location24Jun16 Genetic maps

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.

I agree to the Data Usage Policy as specified in Toronto Statement.