T3/Barley

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Annotations
Genes April 2020 Ensembl
Protein Nov 2019 UniProt
Pathways April 2019
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Reports
Variation Effects listing SIFT sore and consequences for markers.
GWAS results updated to include EMBL-EBI expression data and Plant Reactome Pathways.

Marker 3_1533

Marker name	3_1533
Updated on	2013-07-30 14:44:48
A allele
B allele
Sequence

Marker Types

Marker Type Name
OPA SNP Name	View

Annotations

Dataset	Entry	Dataset Description
GrainGenes	POPA3_1533
HARVEST_U32	26	Close Lab: HarvEST Assembly 32 Unigene Number
HARVEST_U35	904	Close Lab: HarvEST Assembly 35 Unigene number
NCBI BLASTN hit	AK372217	Top BLASTN hit in July 2013
NCBI ProteinID	BAK03415.1	Predicted protein (NCBI) of top BLASTn hit, July 2013
Silent SNP	yes	Does the SNP affect the protein product?
Top BLASTN hit species	Hordeum vulgare subsp. vulgare	Organism with the top BLASTN hit in July 2013
U35_PROBE_SET	Contig34_s_at	Close Lab, HarvEST Assembly 35, at least 5 matches
U35_RICE_DESCRIPTION	protein subtilisin-chymotrypsin inhibitor CI-1B, putative, expressed	Close Lab, using HarvEST Barley Assembly 35

Marker Synonyms

Value	Name
U35_904_404	EST Name	View
3_1533	POPA Name	View

Allele Information

Line Data:

Show alleles for all lines

Map locations

Map	Chromosome	Start	End
UCR_1H	1H	10.67	10.67
OWB_1H	1H	17.767	17.767
OPA2011_1H	1H	11.35	11.35
AllSNPs2013_1H	1H	12.67	12.67

Selection List

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.