T3/Barley

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Annotations
Genes April 2020 Ensembl
Protein Nov 2019 UniProt
Pathways April 2019
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Reports
Variation Effects listing SIFT sore and consequences for markers.
GWAS results updated to include EMBL-EBI expression data and Plant Reactome Pathways.

Marker 3_1341

Marker name	3_1341
Updated on	2013-07-30 14:44:48
A allele
B allele
Sequence

Marker Types

Marker Type Name
OPA SNP Name	View

Annotations

Dataset	Entry	Dataset Description
GrainGenes	POPA3_1341
HARVEST_U32	4750	Close Lab: HarvEST Assembly 32 Unigene Number
HARVEST_U35	2412	Close Lab: HarvEST Assembly 35 Unigene number
NCBI BLASTN hit	AK365250	Top BLASTN hit in July 2013
NCBI ProteinID	BAJ96453.1	Predicted protein (NCBI) of top BLASTn hit, July 2013
Silent SNP	yes	Does the SNP affect the protein product?
Top BLASTN hit species	Hordeum vulgare subsp. vulgare	Organism with the top BLASTN hit in July 2013
U35_PROBE_SET	Contig6601_at	Close Lab, HarvEST Assembly 35, at least 5 matches
U35_RICE_DESCRIPTION	protein eukaryotic translation initiation factor 4E-1, putative, expressed	Close Lab, using HarvEST Barley Assembly 35

Marker Synonyms

Value	Name
U35_2412_91	EST Name	View
3_1341	POPA Name	View

Allele Information

Line Data:

Show alleles for all lines

Map locations

Map	Chromosome	Start	End
UCR_3H	3H	170.86	170.86
OWB_3H	3H	203.644	203.644
MB_3H	3H	174.83	174.83
OPA2011_3H	3H	177.5	177.5
AllSNPs2013_3H	3H	160.76	160.76

Selection List

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.