T3/Barley

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What's New

Annotations
Genes April 2020 Ensembl
Protein Nov 2019 UniProt
Pathways April 2019
JBrowse

Reports
Variation Effects listing SIFT sore and consequences for markers.
GWAS results updated to include EMBL-EBI expression data and Plant Reactome Pathways.

Marker 3_1307

Marker name	3_1307
Updated on	2013-07-30 14:44:48
A allele
B allele
Sequence

Marker Types

Marker Type Name
OPA SNP Name	View

Annotations

Dataset	Entry	Dataset Description
GrainGenes	POPA3_1307
HARVEST_U32	15281	Close Lab: HarvEST Assembly 32 Unigene Number
HARVEST_U35	21023	Close Lab: HarvEST Assembly 35 Unigene number
NCBI BLASTN hit	AK362669	Top BLASTN hit in July 2013
NCBI ProteinID	BAJ93873.1	Predicted protein (NCBI) of top BLASTn hit, July 2013
Silent SNP	yes	Does the SNP affect the protein product?
Top BLASTN hit species	Hordeum vulgare subsp. vulgare	Organism with the top BLASTN hit in July 2013
U35_PROBE_SET	Contig17841_at	Close Lab, HarvEST Assembly 35, at least 5 matches
U35_RICE_DESCRIPTION	protein steroid nuclear receptor, ligand-binding, putative, expressed	Close Lab, using HarvEST Barley Assembly 35

Marker Synonyms

Value	Name
U35_21023_588	EST Name	View
3_1307	POPA Name	View

Allele Information

Line Data:

Show alleles for all lines

Map locations

Map	Chromosome	Start	End	Bin
UCR_2H	2H	66.12	66.12
OWB_2H	2H	80.385	80.385

Selection List

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.