Pathways
Information provided by Plant Reactome: a resource for plant metabolic and regulatory pathways and comparative analysis. Using curated rice pathways as a reference,the Plant Reactome predicts pathways in other plant species on the basis of Compara and Inparanoid super-cluster orthology.
The database uses the Arpil 2019 (Gramene r61) release of Plant Reactome.
| Pathway Name | ||
| 13-LOX and 13-HPL pathway | Pathway | Gene List |
| Acyl-CoA synthetase pathway | Pathway | Gene List |
| Alanine biosynthesis III | Pathway | Gene List |
| Allantoin degradation I | Pathway | Gene List |
| Amine and polyamine biosynthesis | Pathway | Gene List |
| Amino acid biosynthesis | Pathway | Gene List |
| Amino acid catabolism | Pathway | Gene List |
| Amino acid metabolism | Pathway | Gene List |
| Aminopropanol biosynthesis | Pathway | Gene List |
| Ammonia assimilation cycle | Pathway | Gene List |
| Anther and pollen development | Pathway | Gene List |
| Anthocyanin biosynthesis (delphinidin 3-O-glucoside) | Pathway | Gene List |
| Anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside) | Pathway | Gene List |
| Arginine biosynthesis I | Pathway | Gene List |
| Arginine biosynthesis II (acetyl cycle) | Pathway | Gene List |
| Arginine degradation | Pathway | Gene List |
| Arsenic uptake and detoxification | Pathway | Gene List |
| Ascorbate biosynthesis | Pathway | Gene List |
| Asparagine biosynthesis I | Pathway | Gene List |
| Asparagine biosynthesis III | Pathway | Gene List |
| Asparagine degradation I | Pathway | Gene List |
| Aspartate biosynthesis I | Pathway | Gene List |
| Auxin signalling | Pathway | Gene List |
| Auxin transport | Pathway | Gene List |
| Beta-alanine biosynthesis II | Pathway | Gene List |
| Beta-alanine biosynthesis III | Pathway | Gene List |
| Biotin biosynthesis II | Pathway | Gene List |
| Brassinosteroid biosynthesis II | Pathway | Gene List |
| Brassinosteroid signaling | Pathway | Gene List |
| Calvin cycle | Pathway | Gene List |
| Canavanine biosynthesis | Pathway | Gene List |
| Carbohydrate metabolism | Pathway | Gene List |
| Cardiolipin biosynthesis | Pathway | Gene List |
| Carotenoid biosynthesis | Pathway | Gene List |
| Cellulose biosynthesis | Pathway | Gene List |
| Chlorophyll a biosynthesis I | Pathway | Gene List |
| Chlorophyll a biosynthesis II | Pathway | Gene List |
| Chlorophyll cycle | Pathway | Gene List |
| Cholesterol biosynthesis I | Pathway | Gene List |
| Cholesterol biosynthesis II (via 24,25-dihydrolanosterol) | Pathway | Gene List |
| Cholesterol biosynthesis III (via desmosterol) | Pathway | Gene List |
| Choline biosynthesis I | Pathway | Gene List |
| Choline biosynthesis III | Pathway | Gene List |
| Chorismate biosynthesis | Pathway | Gene List |
| Circadian rhythm | Pathway | Gene List |
| Citrulline biosynthesis | Pathway | Gene List |
| Citrulline-nitric oxide cycle | Pathway | Gene List |
| CMP-KDO biosynthesis II (from D-arabinose 5-phosphate) | Pathway | Gene List |
| Cofactor biosyntheses | Pathway | Gene List |
| Coumarin biosynthesis (via 2-coumarate) | Pathway | Gene List |
| Cyanate degradation | Pathway | Gene List |
| Cysteine biosynthesis I | Pathway | Gene List |
| Cysteine degradation | Pathway | Gene List |
| Cytokinins 7-N-glucoside biosynthesis | Pathway | Gene List |
| Cytokinins 9-N-glucoside biosynthesis | Pathway | Gene List |
| Cytokinins-O-glucoside biosynthesis | Pathway | Gene List |
| Cytosolic glycolysis | Pathway | Gene List |
| Detoxification | Pathway | Gene List |
| Development of root hair | Pathway | Gene List |
| Divinyl ether biosynthesis II (13-LOX) | Pathway | Gene List |
| Dolichyl-diphosphooligosaccharide biosynthesis | Pathway | Gene List |
| Ent-kaurene biosynthesis | Pathway | Gene List |
| Ethylene biosynthesis and signaling | Pathway | Gene List |
| Ethylene biosynthesis from methionine | Pathway | Gene List |
| Fatty acid and lipid metabolism | Pathway | Gene List |
| Flavin biosynthesis | Pathway | Gene List |
| Flavonoid biosynthesis | Pathway | Gene List |
| Folate polyglutamylation I | Pathway | Gene List |
| Folate polyglutamylation II | Pathway | Gene List |
| Fructan biosynthesis | Pathway | Gene List |
| GA12 biosynthesis | Pathway | Gene List |
| Galactose degradation II | Pathway | Gene List |
| Galactosylcyclitol biosynthesis | Pathway | Gene List |
| Gamma-glutamyl cycle | Pathway | Gene List |
| GDP-D-rhamnose biosynthesis | Pathway | Gene List |
| GDP-L-fucose biosynthesis I (from GDP-D-mannose) | Pathway | Gene List |
| GDP-mannose metabolism | Pathway | Gene List |
| Generation of precursor metabolites and energy | Pathway | Gene List |
| Generation of superoxide radicals | Pathway | Gene List |
| Gentiodelphin biosynthesis | Pathway | Gene List |
| Geranylgeranyldiphosphate biosynthesis II (plastidic) | Pathway | Gene List |
| Gibberellin biosynthesis I (non C-3, non C-13 hydroxylation) | Pathway | Gene List |
| Gibberellin biosynthesis II (early C-3 hydroxylation) | Pathway | Gene List |
| Gibberellin biosynthesis III (early C-13 hydroxylation) | Pathway | Gene List |
| Gibberellin signaling | Pathway | Gene List |
| Glutamate biosynthesis I | Pathway | Gene List |
| Glutamate biosynthesis V | Pathway | Gene List |
| Glutamate degradation | Pathway | Gene List |
| Glutamine biosynthesis I | Pathway | Gene List |
| Glutathione biosynthesis | Pathway | Gene List |
| Glutathione redox reactions I | Pathway | Gene List |
| Glutathione redox reactions II | Pathway | Gene List |
| Glycerol degradation I | Pathway | Gene List |
| Glycine betaine biosynthesis III | Pathway | Gene List |
| Glycine biosynthesis I | Pathway | Gene List |
| Glycolipid desaturation | Pathway | Gene List |
| Growth and developmental processes | Pathway | Gene List |
| Histidine biosynthesis I | Pathway | Gene List |
| Homocysteine biosynthesis | Pathway | Gene List |
| Homoserine biosynthesis | Pathway | Gene List |
| Hormone signaling, transport, and metabolism | Pathway | Gene List |
| Hydroxycinnamic acid serotonin amides biosynthesis | Pathway | Gene List |
| IAA biosynthesis I | Pathway | Gene List |
| IAA biosynthesis II | Pathway | Gene List |
| IAA biosynthesis VI (via indole-3-acetamide) | Pathway | Gene List |
| Inflorescence development | Pathway | Gene List |
| Inorganic nutrients metabolism | Pathway | Gene List |
| Intracellular auxin transport | Pathway | Gene List |
| Iron uptake and transport in root vascular system | Pathway | Gene List |
| Isoleucine biosynthesis from threonine | Pathway | Gene List |
| Jasmonic acid biosynthesis | Pathway | Gene List |
| Jasmonic acid signaling | Pathway | Gene List |
| Kievitone biosynthesis | Pathway | Gene List |
| Lactucaxanthin biosynthesis | Pathway | Gene List |
| Leucine biosynthesis | Pathway | Gene List |
| Leucodelphinidin biosynthesis | Pathway | Gene List |
| Leucopelargonidin and leucocyanidin biosynthesis | Pathway | Gene List |
| Linear furanocoumarin biosynthesis | Pathway | Gene List |
| Lipid-A-precursor biosynthesis | Pathway | Gene List |
| Long day regulated expression of florigens | Pathway | Gene List |
| Lycopene catabolism | Pathway | Gene List |
| Lysine biosynthesis I | Pathway | Gene List |
| Lysine biosynthesis II | Pathway | Gene List |
| Lysine biosynthesis VI | Pathway | Gene List |
| Lysine degradation I | Pathway | Gene List |
| Lysine degradation II | Pathway | Gene List |
| Maackiain biosynthesis | Pathway | Gene List |
| Mannose degradation | Pathway | Gene List |
| Medicarpin biosynthesis | Pathway | Gene List |
| Metabolism and regulation | Pathway | Gene List |
| Methionine biosynthesis II | Pathway | Gene List |
| Methionine salvage pathway | Pathway | Gene List |
| Methylerythritol phosphate pathway | Pathway | Gene List |
| Mevalonate pathway | Pathway | Gene List |
| Mitochondrial pyruvate metabolism | Pathway | Gene List |
| Momilactone biosynthesis | Pathway | Gene List |
| Monoterpene biosynthesis | Pathway | Gene List |
| Mugineic acid biosynthesis | Pathway | Gene List |
| Myo-inositol biosynthesis | Pathway | Gene List |
| NAD biosynthesis I (from aspartate) | Pathway | Gene List |
| Nitrate assimilation | Pathway | Gene List |
| Nucleotide metabolism | Pathway | Gene List |
| Oleoresin monoterpene volatiles biosynthesis | Pathway | Gene List |
| Ornithine biosynthesis | Pathway | Gene List |
| Pantothenate and coenzyme A biosynthesis III | Pathway | Gene List |
| Pantothenate biosynthesis I | Pathway | Gene List |
| Pantothenate biosynthesis II | Pathway | Gene List |
| Peptidoglycan biosynthesis I | Pathway | Gene List |
| Phaseic acid biosynthesis | Pathway | Gene List |
| Phenylalanine biosynthesis I | Pathway | Gene List |
| Phenylalanine degradation III | Pathway | Gene List |
| Phenylpropanoid biosynthesis | Pathway | Gene List |
| Phenylpropanoid biosynthesis, initial reactions | Pathway | Gene List |
| Phospholipid biosynthesis I | Pathway | Gene List |
| Photorespiration | Pathway | Gene List |
| Phylloquinone biosynthesis | Pathway | Gene List |
| Phytic acid biosynthesis | Pathway | Gene List |
| Phytic acid biosynthesis (lipid-independent) | Pathway | Gene List |
| Phytyl-PP biosynthesis | Pathway | Gene List |
| Pinobanksin biosynthesis | Pathway | Gene List |
| Plastid glycolysis | Pathway | Gene List |
| Polar auxin transport | Pathway | Gene List |
| Polyisoprenoid biosynthesis | Pathway | Gene List |
| Proline biosynthesis I | Pathway | Gene List |
| Proline biosynthesis V (from arginine) | Pathway | Gene List |
| Proline degradation | Pathway | Gene List |
| PRPP biosynthesis I | Pathway | Gene List |
| Putrescine biosynthesis I | Pathway | Gene List |
| Putrescine biosynthesis II | Pathway | Gene List |
| Pyridoxal 5'-phosphate biosynthesis | Pathway | Gene List |
| Pyridoxal 5'-phosphate salvage pathway | Pathway | Gene List |
| Pyridoxamine anabolism | Pathway | Gene List |
| Reactive oxygen species (ROS) homeostasis | Pathway | Gene List |
| Recognition of fungal and bacterial pathogens and immunity response | Pathway | Gene List |
| Regulation of seed size | Pathway | Gene List |
| Regulatory network of nutrient accumulation | Pathway | Gene List |
| Removal of superoxide radicals | Pathway | Gene List |
| Reproductive meristem phase change | Pathway | Gene List |
| Reproductive structure development | Pathway | Gene List |
| Response to Aluminum stress | Pathway | Gene List |
| Response to cold temperature | Pathway | Gene List |
| Response to heavy metals | Pathway | Gene List |
| Response to iron deficiency | Pathway | Gene List |
| Response to phosphate deficiency | Pathway | Gene List |
| Responses to stimuli: abiotic stimuli and stresses | Pathway | Gene List |
| Responses to stimuli: biotic stimuli and stresses | Pathway | Gene List |
| Resveratrol biosynthesis | Pathway | Gene List |
| Root structure development | Pathway | Gene List |
| S-adenosyl-L-methionine cycle | Pathway | Gene List |
| S-methylmethionine cycle | Pathway | Gene List |
| Salicylate biosynthesis | Pathway | Gene List |
| Salicylic acid signaling | Pathway | Gene List |
| Secologanin and strictosidine biosynthesis | Pathway | Gene List |
| Secondary metabolism | Pathway | Gene List |
| Seed development | Pathway | Gene List |
| Short day regulated expression of florigens | Pathway | Gene List |
| Spermidine biosynthesis | Pathway | Gene List |
| Spermine biosynthesis | Pathway | Gene List |
| Sphingolipid metabolism | Pathway | Gene List |
| Starch biosynthesis | Pathway | Gene List |
| Sterol biosynthesis | Pathway | Gene List |
| Strigolactone biosynthesis | Pathway | Gene List |
| Strigolactone signaling | Pathway | Gene List |
| Suberin biosynthesis | Pathway | Gene List |
| Sucrose biosynthesis | Pathway | Gene List |
| Sulfate activation for sulfonation | Pathway | Gene List |
| TCA cycle (plant) | Pathway | Gene List |
| Tetrahydrofolate biosynthesis I | Pathway | Gene List |
| Tetrahydrofolate biosynthesis II | Pathway | Gene List |
| Thiamine biosynthesis | Pathway | Gene List |
| Thiosulfate disproportionation III (rhodanese) | Pathway | Gene List |
| Threonine biosynthesis from homoserine | Pathway | Gene List |
| Threonine degradation | Pathway | Gene List |
| Transition from vegetative to reproductive shoot apical meristem | Pathway | Gene List |
| Trehalose biosynthesis I | Pathway | Gene List |
| Trehalose degradation II | Pathway | Gene List |
| Tricin biosynthesis | Pathway | Gene List |
| Tryptophan biosynthesis | Pathway | Gene List |
| tyrosine degradation I | Pathway | Gene List |
| UDP-D-apiose biosynthesis | Pathway | Gene List |
| UDP-D-glucuronate biosynthesis (from myo-inositol) | Pathway | Gene List |
| UDP-D-xylose biosynthesis | Pathway | Gene List |
| UDP-L-arabinose biosynthesis I (from UDP-xylose) | Pathway | Gene List |
| UDP-N-acetylgalactosamine biosynthesis | Pathway | Gene List |
| Ureide biosynthesis | Pathway | Gene List |
| Valine biosynthesis | Pathway | Gene List |
| Valine degradation | Pathway | Gene List |
| Vegetative structure development | Pathway | Gene List |
| Vitamin E biosynthesis | Pathway | Gene List |
| Wighteone and luteone biosynthesis | Pathway | Gene List |
| Xylan biosynthesis | Pathway | Gene List |
| Xylogalacturonan biosynthesis | Pathway | Gene List |
| Xyloglucan biosynthesis | Pathway | Gene List |
| Xylose degradation | Pathway | Gene List |