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  T3/Barley - Variant Effects

Variant Effects

This page provides links to Sorting Intolerant From Tolerant (SIFT) and Variant Effect Predictor (VEP) to predict whether an amino acid substitution affects protein function.
SIFT missense predictions for genomes: Nature Protocols 2016; 11:1-9. The Ensembl Variant Effect Predictor: Genome Biology Jun 6;17(1):122. (2016) doi:10.1186/s13059-016-0974-4.

Please select one or more markers

Genome Assembly

Warning: no local VEP calculations for IBSC_v2, use the link in the gene column to show a table with known variations.

To run Variant Effect Predictor, copy the data below and paste it into the text box on the website Ensembl Plant VEP. Calculations take about 5 minutes per marker.

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.

I agree to the Data Usage Policy as specified in Toronto Statement.