T3/Barley

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What's New

Pathways (Feb 2019)
Pathways
Annotations (Jan 2019)
Genes, JBrowse

Reports
Variation Effects listing SIFT sore and consequences for markers.
GWAS results updated to include EMBL-EBI expression data and Plant Reactome Pathways.

Also see conflicts by experiment, conflicts by marker, and All Allele Conflicts.

Allele Conflicts between experiments by Line

Select the link for each line name to view the conflicts between experiments and by marker.
When there are more than 2 experiments the values are for the experiments that have the largest percentage of conflicts.

line name	conflicts	comparisons	percent conflicts
FEG141-20	1205	1536	78
FEG241-60	3513	7864	45
FEG242-07	3512	7864	45
FEG242-47	3528	7864	45
FEG242-67	3530	7864	45
FEG242-70	3521	7864	45
FEG243-62	3531	7864	45
FEG244-44	3552	7864	45
FEG248-27	3543	7864	45
FEG249-55	3512	7864	45
FEG249-62	3510	7864	45
FEG250-16	3511	7864	45
FEG250-27	3537	7864	45
FEG250-46	3506	7864	45
FEG251-08	3508	7864	45
FEG251-17	3544	7864	45
FEG251-22	3514	7864	45
FEG251-67	3547	7864	45
FEG252-34	3527	7864	45
FEG252-60	3521	7864	45
FEG253-40	3527	7864	45
FEG253-70	3526	7864	45
FEG254-09	3560	7864	45
FEG254-11	3556	7864	45
FEG254-13	3503	7864	45
FEG254-16	3507	7864	45
FEG254-31	3515	7864	45
FEG254-66	3529	7864	45
FEG256-37	3519	7864	45
FEG256-59	3522	7864	45
FEG257-21	3548	7864	45
FEG257-37	3503	7864	45
FEG257-40	3531	7864	45
M157	3565	7864	45
FEG260-11	3556	7864	45
FEG262-27	3522	7864	45
FEG262-47	3539	7864	45
FEG262-62	3515	7864	45
FEG262-70	3530	7864	45
FEG263-10	3525	7864	45
FEG263-25	3506	7864	45
FEG263-33	3520	7864	45
FEG243-57	3484	7864	44
FEG258-40	3468	7864	44
FEG258-69	3494	7864	44
FEG263-04	3492	7864	44
FEG263-22	3498	7864	44
MANCHURIA	533	1335	40
ELS6302-5	2534	6411	40
ALBA	2661	6793	39
IAR/B/37	2412	6411	38
ELS6302-74	1852	6411	29
HUNDRED	371	1333	28
ALEMAYA_MAGO	1800	6411	28
WYSOR	255	952	27
Z068R055S	393	1536	26
ABYSSINIAN1118	1355	6411	21
CI13141	1351	6411	21
M120	283	1454	19
ELS6402-467\|CIHO14881	1217	6411	19
VA01H-68	269	1536	18
LARKER	139	832	17
M115	231	1454	16
VA05H-59	232	1536	15
VA06H-18	223	1536	15
DEFICIENS_D_ABYSSINIA	884	6411	14
LACEY	171	1329	13
2ND27422	179	1536	12
2ND27421	173	1536	11
KOLD	85	832	10
GAW141-2	661	6411	10
SI4-29	141	1536	9
1997	574	6411	9
HOR2928	583	6411	9
LEGACY	58	705	8
9244	515	6411	8
CI13743	495	6411	8
GAW79-3	110	1322	8
PRICE	12	178	7
CI11709	462	6411	7
CI12089	478	6411	7
ELS6402-468	461	6411	7
IAR/B/252	418	6411	7
IAR/B/253	418	6411	7
AC_METCALFE	54	875	6
BOWMAN	74	1333	6
BISON4H+5H	56	871	6
290B	394	6411	6
CI13737	380	6411	6
IAR/B/434	385	6411	6
IAR/B/57	371	6411	6
M109	65	1388	5
STEPTOE	39	832	5
QUEST	79	1454	5
2ND23146	64	1335	5
FB6R05-25-1	125	2617	5
2ND27348	82	1536	5
CI12090	307	6411	5
E586/6	325	6411	5
IAR/B/328-3	351	6411	5
MERIT	36	952	4
DOYCE	34	778	4
HOCKETT	32	875	4
RADIANT	25	705	4
VA05H-120	56	1536	4
ND22895	51	1335	4
FB6R01-4-3	107	2617	4
2ND27405	62	1536	4
CI13745	287	6411	4
S7244	267	6411	4
GARNET	23	782	3
BARONESSE	21	778	3
THOROUGHBRED	21	705	3
NOMINI	20	705	3
CONLON	27	827	3
CHARLES	24	832	3
CONRAD	29	832	3
EIGHT-TWELVE	35	1333	3
ND22182	39	1335	3
ND22996	39	1335	3
VA06H-149	51	1536	3
FB6R02-22-2	89	2617	3
2ND27397	44	1536	3
CDC_COPELAND	19	875	2
VA03H-61	37	1536	2
ND23117	28	1335	2
ND24393	25	1335	2
ND24564	30	1335	2
VA06H-48	27	1536	2
FB2R28-15-1	62	2617	2
2ND27346	32	1536	2
2ND27374	31	1536	2
2ND27705	32	1329	2
FEG251-45	128	7864	2
FEG252-37	127	7864	2
FEG253-56	126	7864	2
FEG258-10	124	7864	2
FEG258-23	122	7864	2
CALLAO	18	1536	1
VA96-44-304	22	1536	1
VA05B-69	23	1536	1
2ND27409	21	1536	1
H-2227	44	6411	1
S-36	41	6411	1

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.

I agree to the Data Usage Policy as specified in Toronto Statement.