Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment VC_MNWC1_2011_384
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position |
| 11_10002 | 1H | 458109745 |
| 11_10006 | 1H | 480448307 |
| 11_10013 | 6H | 46541683 |
| 11_10023 | 6H | 16132371 |
| 11_10025 | 7H | 19591102 |
| 11_10026 | 3H | 28807967 |
| 11_10050 | 7H | 78305253 |
| 11_10052 | 4H | 545849890 |
| 11_10058 | 5H | 280612563 |
| 11_10064 | 6H | 15802022 |
| 11_10069 | 7H | 492206525 |
| 11_10072 | 2H | 751886787 |
| 11_10078 | 7H | 636617013 |
| 11_10085 | 2H | 758851055 |
| 11_10094 | 5H | 579653238 |
| 11_10095 | 5H | 601142082 |
| 11_10107 | 6H | 570019236 |
| 11_10112 | 3H | 11039299 |
| 11_10120 | 6H | 1361796 |
| 11_10128 | 2H | 697193072 |
| 11_10129 | 6H | 30807567 |
| 11_10130 | 7H | 310311500 |
| 11_10139 | 6H | 550448907 |
| 11_10165 | 6H | 14306449 |
| 11_10169 | 7H | 597748994 |
| 11_10182 | 7H | 628806795 |
| 11_10184 | 3H | 606945320 |
| 11_10186 | 1H | 17570165 |
| 11_10202 | 6H | 541830530 |
| 11_10213 | 2H | 654161251 |
| 11_10214 | 2H | 672009556 |
| 11_10216 | 2H | 32348573 |
| 11_10221 | 4H | 12270849 |
| 11_10239 | 6H | 564086003 |
| 11_10247 | 4H | 585200008 |
| 11_10253 | 3H | 591895583 |
| 11_10260 | 5H | 38558392 |
| 11_10275 | 1H | 36687000 |
| 11_10292 | Un | 77950893 |
| 11_10299 | 7H | 126298543 |
| 11_10301 | 7H | 590487359 |
| 11_10303 | 7H | 532185376 |
| 11_10309 | 4H | 581788124 |
| 11_10310 | 5H | 661443694 |
| 11_10315 | 2H | 740894659 |
| 11_10319 | 4H | 5074747 |
| 11_10324 | 1H | 397171463 |
| 11_10326 | 2H | 3326203 |
| 11_10331 | 6H | 529091969 |
| 11_10343 | 3H | 694855059 |
| 11_10346 | 7H | 70162054 |
| 11_10357 | 1H | 517540377 |
| 11_10379 | 4H | 435363347 |
| 11_10387 | 4H | 644449830 |
| 11_10405 | 5H | 657266491 |
| 11_10429 | 2H | 704365928 |
| 11_10431 | 7H | 110757927 |
| 11_10436 | 2H | 542670441 |
| 11_10438 | 1H | 303519071 |
| 11_10454 | 7H | 639840882 |
| 11_10460 | 1H | 2579017 |
| 11_10470 | 1H | 92433217 |
| 11_10477 | 5H | 565888314 |
| 11_10480 | 4H | 437167992 |
| 11_10494 | 6H | 35207872 |
| 11_10510 | 4H | 623209165 |
| 11_10516 | 1H | 456593344 |
| 11_10521 | 5H | 597317333 |
| 11_10525 | 2H | 49988534 |
| 11_10534 | 7H | 448912368 |
| 11_10552 | 1H | 419381787 |
| 11_10559 | 3H | 23094350 |
| 11_10565 | 3H | 17613152 |
| 11_10574 | 4H | 11770361 |
| 11_10576 | 7H | 46106073 |
| 11_10578 | 5H | 536448463 |
| 11_10588 | 4H | 604442927 |
| 11_10597 | 1H | 37114410 |
| 11_10601 | 3H | 54950033 |
| 11_10621 | 5H | 23246071 |
| 11_10628 | 3H | 579748358 |
| 11_10638 | 2H | 100641976 |
| 11_10641 | 5H | 482426682 |
| 11_10644 | 1H | 541351026 |
| 11_10648 | 2H | 52786444 |
| 11_10676 | 6H | 21816820 |
| 11_10682 | 7H | 2212170 |
| 11_10686 | 1H | 476365128 |
| 11_10695 | Un | 56732627 |
| 11_10697 | 4H | 633602081 |
| 11_10700 | 7H | 428682740 |
| 11_10702 | 3H | 681332144 |
| 11_10707 | 2H | 707268000 |
| 11_10712 | 4H | 630904023 |
| 11_10721 | 7H | 75226809 |
| 11_10729 | 1H | 530180226 |
| 11_10731 | 2H | 701963123 |
| 11_10738 | 4H | 10019019 |
| 11_10744 | 1H | 18807356 |
| 11_10753 | Un | 40990529 |
| 11_10760 | 1H | 23815813 |
| 11_10764 | 1H | 34087686 |
| 11_10770 | 2H | 755005509 |
| 11_10772 | 7H | 59719498 |
| 11_10775 | Un | 554832 |
| 11_10783 | 5H | 598250952 |
| 11_10785 | 4H | 612082524 |
| 11_10799 | 6H | 25149597 |
| 11_10818 | 2H | 636549210 |
| 11_10819 | 5H | 609200677 |
| 11_10825 | 3H | 36786737 |
| 11_10837 | 2H | 51957324 |
| 11_10842 | 3H | 641758598 |
| 11_10867 | 3H | 633641840 |
| 11_10868 | 6H | 16876562 |
| 11_10869 | 5H | 646684592 |
| 11_10873 | 1H | 14374682 |
| 11_10914 | 4H | 511791369 |
| 11_10919 | 2H | 52014030 |
| 11_10920 | 7H | 29716819 |
| 11_10943 | 2H | 21582733 |
| 11_10983 | 7H | 167862263 |
| 11_10999 | 7H | 650404231 |
| 11_11002 | 3H | 47570630 |
| 11_11014 | 7H | 67727614 |
| 11_11015 | 2H | 115322334 |
| 11_11024 | 5H | 293388505 |
| 11_11048 | 5H | 12380644 |
| 11_11054 | 2H | 91940117 |
| 11_11059 | 2H | 9658541 |
| 11_11061 | 2H | 70642845 |
| 11_11066 | 4H | 633042658 |
| 11_11080 | 5H | 598917589 |
| 11_11086 | 3H | 219956193 |
| 11_11094 | 2H | 693684636 |
| 11_11098 | 7H | 98043395 |
| 11_11111 | 6H | 578867997 |
| 11_11127 | 3H | 652305192 |
| 11_11147 | 6H | 536786820 |
| 11_11180 | 4H | 37600756 |
| 11_11216 | 5H | 644058548 |
| 11_11236 | 2H | 705262924 |
| 11_11243 | 7H | 623438216 |
| 11_11262 | 2H | 737639570 |
| 11_11294 | 6H | 545956735 |
| 11_11299 | 4H | 632171834 |
| 11_11307 | 2H | 678192598 |
| 11_11343 | 7H | 573239658 |
| 11_11345 | 4H | 4314841 |
| 11_11350 | 5H | 553412544 |
| 11_11355 | 5H | 527152265 |
| 11_11364 | 5H | 662755816 |
| 11_11375 | 5H | 591828836 |
| 11_11381 | 5H | 4734215 |
| 11_11384 | 2H | 491105224 |
| 11_11406 | 6H | 6770161 |
| 11_11436 | 3H | 673608563 |
| 11_11440 | 7H | 642430202 |
| 11_11441 | 5H | 617104182 |
| 11_11445 | 7H | 505361481 |
| 11_11456 | 5H | 587890484 |
| 11_11458 | 6H | 527406890 |
| 11_11479 | 6H | 12015182 |
| 11_11497 | 5H | 626697338 |
| 11_11502 | 3H | 186950158 |
| 11_11505 | 2H | 74603738 |
| 11_11516 | 3H | 688380435 |
| 11_11528 | 1H | 536947615 |
| 11_20009 | 3H | 613898250 |
| 11_20010 | 5H | 6354602 |
| 11_20012 | 4H | 32413102 |
| 11_20014 | 7H | 16621046 |
| 11_20023 | 3H | 617763235 |
| 11_20052 | 6H | 32052872 |
| 11_20058 | 6H | 443897804 |
| 11_20060 | 7H | 109656682 |
| 11_20062 | 4H | 535955130 |
| 11_20083 | 7H | 537251062 |
| 11_20085 | 3H | 653287342 |
| 11_20092 | 7H | 607662553 |
| 11_20095 | 1H | 429810625 |
| 11_20097 | 5H | 542621417 |
| 11_20103 | 7H | 593169091 |
| 11_20107 | 2H | 19588001 |
| 11_20114 | 4H | 35787768 |
| 11_20115 | 3H | 559686530 |
| 11_20119 | 4H | 620872317 |
| 11_20125 | 1H | 516309831 |
| 11_20126 | 7H | 39065208 |
| 11_20127 | 5H | 583318805 |
| 11_20134 | 5H | 556603279 |
| 11_20139 | 7H | 640932887 |
| 11_20145 | 4H | 1668279 |
| 11_20149 | 1H | 509763190 |
| 11_20155 | 3H | 672938827 |
| 11_20159 | 3H | 3981157 |
| 11_20160 | 2H | 246219296 |
| 11_20162 | 3H | 108142581 |
| 11_20180 | 4H | 35548341 |
| 11_20189 | 5H | 657005491 |
| 11_20193 | 3H | 39504094 |
| 11_20197 | 4H | 595772102 |
| 11_20224 | 4H | 636430559 |
| 11_20226 | 5H | 2540710 |
| 11_20239 | 5H | 373454403 |
| 11_20245 | 7H | 12860086 |
| 11_20249 | 7H | 56813710 |
| 11_20252 | 3H | 3868857 |
| 11_20266 | Un | 95056833 |
| 11_20290 | 1H | 470389531 |
| 11_20302 | 4H | 16669632 |
| 11_20327 | 5H | 552971221 |
| 11_20365 | Un | 115139269 |
| 11_20367 | 5H | 501849882 |
| 11_20371 | 1H | 13581567 |
| 11_20379 | 6H | 554872905 |
| 11_20384 | 4H | 607800862 |
| 11_20386 | 5H | 13846829 |
| 11_20387 | 2H | 118999843 |
| 11_20388 | 5H | 619075706 |
| 11_20412 | 4H | 502029408 |
| 11_20415 | 6H | 12662384 |
| 11_20438 | 2H | 535553641 |
| 11_20466 | 3H | 441096005 |
| 11_20495 | 7H | 22774581 |
| 11_20498 | 2H | 687725717 |
| 11_20502 | 1H | 1913952 |
| 11_20504 | 7H | 649471783 |
| 11_20515 | 4H | 622617880 |
| 11_20527 | 3H | 647753562 |
| 11_20531 | 6H | 552807238 |
| 11_20533 | 5H | 5617158 |
| 11_20545 | 5H | 630052019 |
| 11_20550 | 1H | 498975662 |
| 11_20552 | 3H | 22601987 |
| 11_20557 | 4H | 10531487 |
| 11_20563 | 2H | 12243677 |
| 11_20566 | 3H | 545314204 |
| 11_20570 | 7H | 610498605 |
| 11_20590 | 2H | 733665592 |
| 11_20600 | 6H | 182973407 |
| 11_20603 | 1H | 553490762 |
| 11_20607 | 3H | 28024941 |
| 11_20625 | 1H | 523884637 |
| 11_20626 | 3H | 605214250 |
| 11_20629 | 5H | 581323626 |
| 11_20636 | 6H | 499364199 |
| 11_20647 | 3H | 44976265 |
| 11_20650 | 3H | 634853591 |
| 11_20654 | 6H | 536785563 |
| 11_20657 | 1H | 484964797 |
| 11_20668 | 4H | 646020727 |
| 11_20675 | 6H | 94715959 |
| 11_20682 | 6H | 517882968 |
| 11_20686 | 5H | 644819915 |
| 11_20699 | 2H | 638242025 |
| 11_20701 | 4H | 632600239 |
| 11_20710 | 7H | 5664553 |
| 11_20713 | 5H | 479122439 |
| 11_20714 | 6H | 495778737 |
| 11_20720 | 6H | 132308036 |
| 11_20722 | 7H | 19656144 |
| 11_20736 | 5H | 514827552 |
| 11_20740 | 4H | 578447444 |
| 11_20742 | 3H | 17409777 |
| 11_20744 | 6H | 509428370 |
| 11_20758 | 7H | 31373284 |
| 11_20765 | 4H | 601568256 |
| 11_20772 | 1H | 557125644 |
| 11_20781 | 2H | 649449314 |
| 11_20792 | 1H | 504087501 |
| 11_20795 | 5H | 557081865 |
| 11_20797 | 3H | 2268898 |
| 11_20844 | 1H | 525478648 |
| 11_20850 | 5H | 229928354 |
| 11_20858 | 3H | 1006316 |
| 11_20864 | 2H | 38834908 |
| 11_20868 | Un | 93085224 |
| 11_20873 | 5H | 9866403 |
| 11_20877 | 3H | 535783451 |
| 11_20909 | 1H | 520489712 |
| 11_20923 | 2H | 684263618 |
| 11_20939 | 4H | 50778111 |
| 11_20944 | 3H | 629156883 |
| 11_20956 | 1H | 455813887 |
| 11_20959 | 1H | 533223547 |
| 11_20960 | 2H | 627657786 |
| 11_20962 | 7H | 647000283 |
| 11_20970 | 3H | 259755368 |
| 11_20972 | 6H | 547258865 |
| 11_20974 | 4H | 627962516 |
| 11_20976 | 3H | 8913941 |
| 11_20995 | 3H | 487528331 |
| 11_21000 | 1H | 362148549 |
| 11_21008 | 3H | 680228127 |
| 11_21011 | 5H | 146141244 |
| 11_21015 | 2H | 31559962 |
| 11_21032 | 6H | 9846099 |
| 11_21052 | 5H | 661973771 |
| 11_21056 | 4H | 2800462 |
| 11_21068 | 1H | 540586570 |
| 11_21073 | 4H | 66861565 |
| 11_21093 | 3H | 76088289 |
| 11_21109 | 3H | 160752469 |
| 11_21110 | 2H | 581251463 |
| 11_21112 | 6H | 578734148 |
| 11_21122 | 4H | 25916241 |
| 11_21124 | 6H | 288957353 |
| 11_21125 | 2H | 722486571 |
| 11_21126 | 1H | 479986322 |
| 11_21133 | 5H | 504438116 |
| 11_21140 | 1H | 539810979 |
| 11_21141 | 5H | 650559496 |
| 11_21162 | 5H | 662638435 |
| 11_21163 | 3H | 560934688 |
| 11_21175 | 2H | 677845247 |
| 11_21189 | 3H | 64618663 |
| 11_21191 | Un | 52769203 |
| 11_21192 | 1H | 496080353 |
| 11_21202 | 5H | 4183705 |
| 11_21205 | 2H | 619885222 |
| 11_21209 | 7H | 629621950 |
| 11_21210 | 4H | 634781955 |
| 11_21223 | 7H | 641762860 |
| 11_21224 | 6H | 524652121 |
| 11_21226 | 1H | 7228966 |
| 11_21229 | 7H | 628369772 |
| 11_21243 | 4H | 618502745 |
| 11_21253 | 5H | 31032251 |
| 11_21254 | 4H | 76591117 |
| 11_21258 | 2H | 610741736 |
| 11_21260 | 5H | 371780738 |
| 11_21266 | 3H | 666091295 |
| 11_21272 | 3H | 667178220 |
| 11_21281 | 6H | 38242974 |
| 11_21304 | 2H | 42238196 |
| 11_21309 | 5H | 498937976 |
| 11_21315 | 2H | 712801076 |
| 11_21351 | 2H | 663236849 |
| 11_21359 | 4H | 10552595 |
| 11_21377 | 2H | 11188932 |
| 11_21381 | 3H | 608636473 |
| 11_21389 | 4H | 23477467 |
| 11_21392 | 1H | 528122253 |
| 11_21402 | 3H | 112601789 |
| 11_21406 | 2H | 718210885 |
| 11_21426 | 5H | 9862051 |
| 11_21427 | 3H | 654775497 |
| 11_21431 | 1H | 453000239 |
| 11_21440 | 2H | 716727690 |
| 11_21445 | 5H | 520992168 |
| 11_21448 | 7H | 576344943 |
| 11_21455 | 6H | 571737578 |
| 11_21480 | Un | 75877481 |
| 11_21491 | 7H | 53441694 |
| 11_21495 | 3H | 611781347 |
| 11_21505 | 3H | 580635994 |
| 11_21508 | 5H | 315391792 |
| 11_21509 | 6H | 415952337 |
| 11_21513 | 3H | 615642170 |
| 11_21521 | 6H | 343390 |
| 11_21528 | 7H | 49445658 |
| 12_30850 | 5H | 559673560 |
| 12_30854 | 5H | 559462764 |
| 12_30872 | 2H | 29124597 |
| 12_30895 | 3H | 619904822 |