Marker Annotation Report
This analysis shows the results of using BLAST to match the markers sequence in the T3 database to the the wheat genome sequence.The BLAST results link to GBrowse URGI and Ensembl genome browsers. The top level page gives a summary of the matching markers for each experiment.
Select the match link to view the BLAST hits for each experiment.
Methods: A marker is identified as a match if either
1. the sequence homology is > 99% and aligment length is > 95% of the query sequence.
2. there is only one mismatch and the alignment length is > 95% of the query sequence.
The analysis uses blastn v2.2.28+ with the following arguments "-outfmt 6 -dust no -word_size 16 -task megablast -evalue 1e-08".
BLAST matches for experiment 2017_NDSU_Yuma_2R
Select link to view match in Ensembl Plant.
| Query | Reference Contig | position |
| 11_10015 | 6H | 552729604 |
| 11_10024 | 5H | 557857271 |
| 11_10026 | 3H | 28807967 |
| 11_10043 | 1H | 456852946 |
| 11_10047 | 3H | 552742686 |
| 11_10048 | 4H | 36724107 |
| 11_10064 | 6H | 15802022 |
| 11_10107 | 6H | 570019236 |
| 11_10120 | 6H | 1361796 |
| 11_10153 | 7H | 110445324 |
| 11_10158 | 3H | 493556239 |
| 11_10161 | 5H | 631251337 |
| 11_10174 | 7H | 654413172 |
| 11_10189 | 6H | 439399099 |
| 11_10196 | 2H | 636433774 |
| 11_10202 | 6H | 541830530 |
| 11_10208 | 4H | 2789843 |
| 11_10214 | 2H | 672009556 |
| 11_10217 | 5H | 623995670 |
| 11_10220 | 6H | 527476378 |
| 11_10225 | 3H | 449665313 |
| 11_10227 | 6H | 359588787 |
| 11_10259 | 1H | 61118929 |
| 11_10275 | 1H | 36687000 |
| 11_10297 | 2H | 83431627 |
| 11_10301 | 7H | 590487359 |
| 11_10338 | 1H | 532951827 |
| 11_10350 | 3H | 542983380 |
| 11_10363 | 5H | 620203427 |
| 11_10370 | 7H | 348272917 |
| 11_10373 | 3H | 496167125 |
| 11_10376 | 2H | 725655512 |
| 11_10377 | 6H | 383275596 |
| 11_10383 | 2H | 723653192 |
| 11_10394 | 7H | 240518944 |
| 11_10400 | 6H | 540177545 |
| 11_10404 | 2H | 708297390 |
| 11_10419 | 1H | 4153868 |
| 11_10422 | Un | 11873671 |
| 11_10429 | 2H | 704365928 |
| 11_10431 | 7H | 110757927 |
| 11_10433 | 1H | 508780596 |
| 11_10438 | 1H | 303519071 |
| 11_10442 | 7H | 506517884 |
| 11_10443 | 1H | 558025045 |
| 11_10446 | 2H | 716480871 |
| 11_10451 | 7H | 31340804 |
| 11_10496 | 6H | 543914605 |
| 11_10498 | 2H | 82437223 |
| 11_10520 | 1H | 376489575 |
| 11_10538 | 2H | 707452624 |
| 11_10565 | 3H | 17613152 |
| 11_10576 | 7H | 46106073 |
| 11_10577 | 4H | 69380591 |
| 11_10582 | 5H | 632548119 |
| 11_10589 | 5H | 623949597 |
| 11_10590 | 1H | 555618219 |
| 11_10606 | 4H | 558683988 |
| 11_10610 | 4H | 638202451 |
| 11_10611 | 4H | 633173997 |
| 11_10625 | 2H | 738362548 |
| 11_10627 | 4H | 568135184 |
| 11_10639 | 4H | 544748028 |
| 11_10641 | 5H | 482426682 |
| 11_10646 | 3H | 676624509 |
| 11_10656 | 2H | 720349512 |
| 11_10669 | 6H | 965879 |
| 11_10672 | 3H | 32615445 |
| 11_10673 | 7H | 496530179 |
| 11_10681 | 3H | 683876412 |
| 11_10688 | 5H | 16277132 |
| 11_10694 | 3H | 684467546 |
| 11_10702 | 3H | 681332144 |
| 11_10707 | 2H | 707268000 |
| 11_10710 | 3H | 35266121 |
| 11_10733 | 2H | 107638923 |
| 11_10736 | 5H | 656077276 |
| 11_10741 | 5H | 631586711 |
| 11_10748 | 6H | 574761427 |
| 11_10751 | 4H | 604403847 |
| 11_10756 | 4H | 63865143 |
| 11_10764 | 1H | 34087686 |
| 11_10787 | 2H | 38368594 |
| 11_10793 | 4H | 45245669 |
| 11_10818 | 2H | 636549210 |
| 11_10823 | 2H | 647456940 |
| 11_10825 | 3H | 36786737 |
| 11_10826 | 2H | 737661735 |
| 11_10834 | 5H | 559204073 |
| 11_10837 | 2H | 51957324 |
| 11_10843 | 7H | 642028895 |
| 11_10846 | 4H | 563098102 |
| 11_10853 | 7H | 607946012 |
| 11_10854 | 1H | 533708596 |
| 11_10868 | 6H | 16876562 |
| 11_10881 | 4H | 471656963 |
| 11_10882 | 6H | 34582877 |
| 11_10900 | 2H | 687072769 |
| 11_10901 | 5H | 629115072 |
| 11_10902 | 5H | 631203604 |
| 11_10916 | 2H | 708638025 |
| 11_10919 | 2H | 52014030 |
| 11_10924 | 7H | 231059190 |
| 11_10926 | 3H | 434842337 |
| 11_10965 | 7H | 26447530 |
| 11_10987 | 2H | 38600279 |
| 11_10999 | 7H | 650404231 |
| 11_11004 | 4H | 584339243 |
| 11_11016 | 3H | 479845259 |
| 11_11040 | 2H | 20661304 |
| 11_11097 | 6H | 47978634 |
| 11_11098 | 7H | 98043395 |
| 11_11111 | 6H | 578867997 |
| 11_11122 | 7H | 148765408 |
| 11_11133 | 2H | 185517764 |
| 11_11214 | 2H | 647135854 |
| 11_11224 | 4H | 560337783 |
| 11_11236 | 2H | 705262924 |
| 11_11239 | 7H | 501750469 |
| 11_11249 | 5H | 484879282 |
| 11_11262 | 2H | 737639570 |
| 11_11323 | 2H | 692056609 |
| 11_11330 | 3H | 628031126 |
| 11_11346 | 2H | 687239015 |
| 11_11367 | 1H | 461403045 |
| 11_11380 | 2H | 743219980 |
| 11_11401 | 3H | 447065363 |
| 11_11406 | 6H | 6770161 |
| 11_11410 | 3H | 683294717 |
| 11_11411 | 3H | 683722415 |
| 11_11431 | 4H | 546808812 |
| 11_11435 | 2H | 636292444 |
| 11_11461 | 7H | 440018338 |
| 11_11478 | 1H | 88883038 |
| 11_11479 | 6H | 12015182 |
| 11_11500 | 4H | 590917631 |
| 11_11505 | 2H | 74603738 |
| 11_11509 | 1H | 554277483 |
| 11_11516 | 3H | 688380435 |
| 11_11533 | 2H | 655112436 |
| 11_20005 | 6H | 574051819 |
| 11_20012 | 4H | 32413102 |
| 11_20013 | 4H | 643005841 |
| 11_20021 | 1H | 526705451 |
| 11_20057 | 3H | 686033929 |
| 11_20058 | 6H | 443897804 |
| 11_20072 | 4H | 567760048 |
| 11_20078 | 5H | 632298125 |
| 11_20080 | 2H | 673846506 |
| 11_20089 | 4H | 642587681 |
| 11_20097 | 5H | 542621417 |
| 11_20104 | 5H | 624403379 |
| 11_20107 | 2H | 19588001 |
| 11_20114 | 4H | 35787768 |
| 11_20125 | 1H | 516309831 |
| 11_20132 | 5H | 372359432 |
| 11_20138 | 1H | 554760325 |
| 11_20159 | 3H | 3981157 |
| 11_20162 | 3H | 108142581 |
| 11_20172 | 3H | 14955141 |
| 11_20178 | 4H | 600671237 |
| 11_20180 | 4H | 35548341 |
| 11_20182 | 2H | 704890469 |
| 11_20200 | 7H | 354110494 |
| 11_20205 | 7H | 489497016 |
| 11_20206 | 5H | 3924393 |
| 11_20211 | Un | 92724535 |
| 11_20212 | 6H | 5178064 |
| 11_20226 | 5H | 2540710 |
| 11_20232 | 6H | 1579056 |
| 11_20269 | 4H | 72688992 |
| 11_20276 | 3H | 469771904 |
| 11_20291 | 6H | 67706383 |
| 11_20294 | 6H | 7539661 |
| 11_20327 | 5H | 552971221 |
| 11_20334 | 5H | 640334690 |
| 11_20339 | 3H | 685223115 |
| 11_20355 | 6H | 562812969 |
| 11_20365 | Un | 115139269 |
| 11_20373 | 1H | 263584 |
| 11_20385 | 7H | 607948063 |
| 11_20388 | 5H | 619075706 |
| 11_20392 | 5H | 485027002 |
| 11_20402 | 5H | 668642360 |
| 11_20410 | 3H | 36874153 |
| 11_20427 | 1H | 314308188 |
| 11_20432 | 1H | 451731100 |
| 11_20455 | 3H | 25862827 |
| 11_20467 | 6H | 560157418 |
| 11_20475 | Un | 7241982 |
| 11_20480 | 2H | 715921671 |
| 11_20482 | 4H | 509230439 |
| 11_20493 | 6H | 5065058 |
| 11_20494 | 2H | 737024225 |
| 11_20495 | 7H | 22774581 |
| 11_20500 | 2H | 183381488 |
| 11_20511 | 2H | 711931346 |
| 11_20526 | 5H | 542984300 |
| 11_20529 | 3H | 7058538 |
| 11_20531 | 6H | 552807238 |
| 11_20549 | 5H | 557014868 |
| 11_20552 | 3H | 22601987 |
| 11_20553 | 5H | 1318464 |
| 11_20558 | 6H | 564917812 |
| 11_20563 | 2H | 12243677 |
| 11_20566 | 3H | 545314204 |
| 11_20603 | 1H | 553490762 |
| 11_20607 | 3H | 28024941 |
| 11_20610 | 4H | 472369069 |
| 11_20646 | 5H | 636606382 |
| 11_20660 | 1H | 329700313 |
| 11_20682 | 6H | 517882968 |
| 11_20701 | 4H | 632600239 |
| 11_20725 | Un | 92479210 |
| 11_20740 | 4H | 578447444 |
| 11_20742 | 3H | 17409777 |
| 11_20746 | 6H | 521667884 |
| 11_20772 | 1H | 557125644 |
| 11_20783 | 6H | 541248677 |
| 11_20794 | 3H | 23309513 |
| 11_20795 | 5H | 557081865 |
| 11_20810 | 1H | 364313610 |
| 11_20828 | 7H | 270644774 |
| 11_20835 | 6H | 361066555 |
| 11_20850 | 5H | 229928354 |
| 11_20864 | 2H | 38834908 |
| 11_20868 | Un | 93085224 |
| 11_20881 | 6H | 486669 |
| 11_20885 | 7H | 176154907 |
| 11_20886 | 6H | 5362408 |
| 11_20893 | 7H | 242564744 |
| 11_20895 | 2H | 727211279 |
| 11_20911 | 7H | 336286542 |
| 11_20912 | 1H | 365007316 |
| 11_20915 | 1H | 555460522 |
| 11_20924 | 4H | 544139497 |
| 11_20929 | 2H | 94907751 |
| 11_20936 | 6H | 34020677 |
| 11_20939 | 4H | 50778111 |
| 11_20944 | 3H | 629156883 |
| 11_20968 | 3H | 24951816 |
| 11_20969 | 6H | 517938283 |
| 11_20996 | 6H | 545781074 |
| 11_21007 | 2H | 674314269 |
| 11_21008 | 3H | 680228127 |
| 11_21024 | 5H | 632099814 |
| 11_21025 | 6H | 541489037 |
| 11_21032 | 6H | 9846099 |
| 11_21035 | 4H | 633031207 |
| 11_21041 | 5H | 629445913 |
| 11_21048 | 1H | 19370549 |
| 11_21067 | 1H | 1431785 |
| 11_21073 | 4H | 66861565 |
| 11_21088 | 2H | 720580161 |
| 11_21095 | 1H | 37694302 |
| 11_21099 | 2H | 755094798 |
| 11_21191 | Un | 52769203 |
| 11_21219 | 1H | 458916428 |
| 11_21220 | 2H | 711230478 |
| 11_21224 | 6H | 524652121 |
| 11_21226 | 1H | 7228966 |
| 11_21239 | 5H | 482752631 |
| 11_21244 | 5H | 437938877 |
| 11_21267 | 3H | 687549675 |
| 11_21271 | 6H | 560160262 |
| 11_21272 | 3H | 667178220 |
| 11_21275 | 5H | 480698266 |
| 11_21280 | 7H | 641309802 |
| 11_21310 | 6H | 441812706 |
| 11_21315 | 2H | 712801076 |
| 11_21353 | 4H | 584557316 |
| 11_21357 | 1H | 352305893 |
| 11_21360 | 5H | 619905239 |
| 11_21361 | 1H | 380928690 |
| 11_21373 | 1H | 509511424 |
| 11_21384 | 1H | 551383184 |
| 11_21397 | 4H | 23879683 |
| 11_21406 | 2H | 718210885 |
| 11_21431 | 1H | 453000239 |
| 11_21440 | 2H | 716727690 |
| 11_21446 | 1H | 508567719 |
| 11_21452 | 5H | 630951108 |
| 11_21453 | 2H | 755079198 |
| 11_21467 | 6H | 570675743 |
| 11_21493 | 3H | 612888418 |
| 11_21521 | 6H | 343390 |
| 11_21528 | 7H | 49445658 |
| 12_10014 | 3H | 685402325 |
| 12_10016 | 5H | 624444586 |
| 12_10088 | 4H | 494330606 |
| 12_10125 | 7H | 489497799 |
| 12_10199 | 6H | 66485252 |
| 12_10218 | 7H | 40109823 |
| 12_10222 | 7H | 251131956 |
| 12_10322 | 5H | 668721862 |
| 12_10333 | 5H | 619075925 |
| 12_10371 | 4H | 33956892 |
| 12_10426 | 4H | 501339584 |
| 12_10502 | 2H | 13236386 |
| 12_10530 | 5H | 16941975 |
| 12_10554 | 6H | 14330320 |
| 12_10575 | 6H | 70919789 |
| 12_10579 | 2H | 727570263 |
| 12_10662 | 3H | 611543683 |
| 12_10698 | 7H | 226518116 |
| 12_10752 | 5H | 567880978 |
| 12_10968 | 3H | 34959733 |
| 12_10982 | 7H | 488307674 |
| 12_11010 | 5H | 651484482 |
| 12_11063 | 4H | 467767377 |
| 12_11169 | 1H | 361246413 |
| 12_11194 | 4H | 628636387 |
| 12_11208 | 3H | 660844021 |
| 12_11255 | 3H | 612797634 |
| 12_11257 | 7H | 114751411 |
| 12_11414 | 3H | 28805649 |
| 12_11450 | 5H | 651487083 |
| 12_11499 | 7H | 498937414 |
| 12_20143 | 4H | 581614604 |
| 12_20237 | 4H | 629645765 |
| 12_20240 | 4H | 34777219 |
| 12_20326 | 2H | 54584401 |
| 12_20421 | 3H | 672215821 |
| 12_21208 | 7H | 614318211 |
| 12_21376 | 3H | 670203243 |
| 12_21386 | 3H | 661418411 |
| 12_21531 | 3H | 670128872 |
| 12_30006 | 4H | 646103540 |
| 12_30007 | 5H | 484377885 |
| 12_30009 | 3H | 485716108 |
| 12_30040 | 7H | 30545668 |
| 12_30049 | 2H | 692526909 |
| 12_30053 | 7H | 234663803 |
| 12_30060 | 4H | 495699304 |
| 12_30062 | 5H | 619890644 |
| 12_30098 | 5H | 554917695 |
| 12_30110 | 1H | 374864785 |
| 12_30118 | 1H | 11498629 |
| 12_30136 | 4H | 583582367 |
| 12_30143 | 7H | 48203463 |
| 12_30144 | 6H | 384884951 |
| 12_30149 | 7H | 87929896 |
| 12_30162 | 5H | 638951179 |
| 12_30165 | 5H | 634446510 |
| 12_30183 | 5H | 622959216 |
| 12_30192 | 3H | 21019739 |
| 12_30199 | 7H | 522445562 |
| 12_30241 | 1H | 17000653 |
| 12_30271 | 3H | 681734603 |
| 12_30329 | 7H | 26188987 |
| 12_30336 | 1H | 31676923 |
| 12_30352 | Un | 30839035 |
| 12_30361 | 6H | 30508253 |
| 12_30385 | 4H | 629486243 |
| 12_30389 | 7H | 354115188 |
| 12_30396 | 2H | 728830847 |
| 12_30411 | 7H | 262018069 |
| 12_30432 | 2H | 54631912 |
| 12_30445 | 7H | 315905440 |
| 12_30455 | 4H | 551439463 |
| 12_30456 | 5H | 565946520 |
| 12_30473 | 6H | 115445291 |
| 12_30481 | 7H | 228406803 |
| 12_30486 | 7H | 235388310 |
| 12_30496 | 7H | 116658838 |
| 12_30506 | Un | 113016235 |
| 12_30510 | 6H | 69634463 |
| 12_30521 | 6H | 29458421 |
| 12_30522 | 1H | 370569335 |
| 12_30543 | 5H | 397673 |
| 12_30544 | 7H | 238659006 |
| 12_30550 | 7H | 285719287 |
| 12_30555 | 2H | 691870667 |
| 12_30566 | 5H | 642241089 |
| 12_30569 | 6H | 115112608 |
| 12_30571 | 3H | 28161638 |
| 12_30573 | 6H | 519372817 |
| 12_30576 | 7H | 66410739 |
| 12_30577 | 5H | 659532782 |
| 12_30591 | 5H | 3152337 |
| 12_30597 | 4H | 52514843 |
| 12_30598 | 2H | 710954522 |
| 12_30603 | 6H | 17924348 |
| 12_30605 | 4H | 461460469 |
| 12_30620 | 4H | 550661796 |
| 12_30621 | 7H | 361405806 |
| 12_30642 | 5H | 636369836 |
| 12_30651 | 6H | 7701030 |
| 12_30657 | 2H | 50870267 |
| 12_30658 | 6H | 50346904 |
| 12_30683 | 1H | 69960449 |
| 12_30691 | 2H | 92524664 |
| 12_30696 | 2H | 635294505 |
| 12_30702 | 7H | 31492177 |
| 12_30734 | 6H | 563067702 |
| 12_30736 | 3H | 687519613 |
| 12_30750 | 1H | 380767247 |
| 12_30760 | 7H | 228832104 |
| 12_30761 | 7H | 640935280 |
| 12_30767 | 3H | 678513370 |
| 12_30780 | 7H | 27546933 |
| 12_30782 | 6H | 92409121 |
| 12_30786 | 1H | 380275827 |
| 12_30794 | 7H | 231100826 |
| 12_30796 | 1H | 84338596 |
| 12_30797 | 7H | 617916935 |
| 12_30829 | 3H | 493556092 |
| 12_30842 | 6H | 14332108 |
| 12_30843 | 6H | 16130844 |
| 12_30857 | 6H | 384634322 |
| 12_30877 | 1H | 13602909 |
| 12_30920 | 3H | 23189958 |
| 12_30921 | 3H | 673188759 |
| 12_30934 | 1H | 557764749 |
| 12_30940 | 6H | 512160455 |
| 12_30953 | 3H | 36787380 |
| 12_30958 | 5H | 666823127 |
| 12_30969 | 1H | 977915 |
| 12_30974 | 7H | 650019168 |
| 12_30975 | 5H | 466893197 |
| 12_30977 | 5H | 2571485 |
| 12_30980 | 5H | 2540132 |
| 12_30996 | 7H | 554189661 |
| 12_30997 | 7H | 130414063 |
| 12_31011 | 3H | 462627529 |
| 12_31023 | 5H | 2754382 |
| 12_31044 | 6H | 553204175 |
| 12_31048 | 6H | 553203851 |
| 12_31100 | 2H | 718210885 |
| 12_31115 | 6H | 553623189 |
| 12_31120 | 7H | 176885969 |
| 12_31123 | 5H | 666455425 |
| 12_31126 | 6H | 573497440 |
| 12_31144 | 1H | 4653990 |
| 12_31148 | 4H | 586675142 |
| 12_31161 | 3H | 667790880 |
| 12_31165 | 5H | 619632955 |
| 12_31205 | 2H | 654960941 |
| 12_31208 | 1H | 331415858 |
| 12_31209 | 2H | 735228887 |
| 12_31211 | 7H | 451634037 |
| 12_31227 | 7H | 265489644 |
| 12_31233 | 6H | 1170011 |
| 12_31264 | 2H | 710953472 |
| 12_31281 | 3H | 428567922 |
| 12_31284 | 2H | 22398480 |
| 12_31297 | 4H | 492500731 |
| 12_31305 | 7H | 45118264 |
| 12_31351 | 7H | 26826004 |
| 12_31353 | 6H | 550500760 |
| 12_31356 | 3H | 540867182 |
| 12_31368 | 5H | 379059639 |
| 12_31374 | 7H | 625633406 |
| 12_31381 | 1H | 325808056 |
| 12_31388 | 3H | 684369878 |
| 12_31393 | 3H | 464907622 |
| 12_31394 | 2H | 627474976 |
| 12_31398 | 2H | 636292482 |
| 12_31428 | 3H | 1367441 |
| 12_31452 | 7H | 141857069 |
| 12_31461 | 2H | 735736634 |
| 12_31467 | 1H | 66850934 |
| 12_31500 | 3H | 671180259 |
| 12_31515 | 4H | 557437524 |
| 12_31529 | 3H | 541045055 |
| 12_31536 | 4H | 568135239 |