Genotyping experiment WBIP384_ABNAM_2012
Description
| Experiment Short Name | WBIP_384 |
| Platform | VeraCode |
| Data Program | USDA-ARS Raleigh, NC (NCG) |
| Breeding Program | University of Minnesota Genomics (UMG) |
| OPA Name | WBIP384 |
| Processing Date | 11/21/2012 |
| Software | Illumina Genome Studio |
| Software version | 2010.3 |
| Comments | Clustering was performed on a family by family basis. Population was genotyped across 10 assays. ###NOTE### Projected/imputed parental variants from the WBIP_9k_Parents data and from exome capture sequence data for the WBIP population can be obtained by downloading the zip file found here: https://triticeaetoolbox.org/barley/raw/genotype/WBIP_ImputedGenotypes_160422.zip |
370 markers were assayed for 822 lines.
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| Removed by filtering | Remaining |
| 24 markers have a minor allele frequency (MAF) less than 5%
8 markers are missing more than 10% of data 29 markers removed | 355 markers |
Maximum Missing Data: %
Minimum MAF: %
Additional files available
| Samples (germplasm lines) | |
| Manifest (markers used) | VC0013453-OPA.opa |
| Cluster File | |
| Raw data |