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Genotyping experiment 2018_CCRU_50K


Experiment Short NameCCRU_50K
PlatformInfinium 50K
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUniversity of Wisconsin - Madison (UW)
OPA NameV2-Mahalingam2018-50K-Manifest.csv
Processing Date6/1/20
SoftwareIllumina Genome Studio
Software version2010.3
CommentsCereal Crops Research Unit, Mahalingam Lab

33933 markers were assayed for 175 lines.

(lines and markers)


Removed by filteringRemaining
4703 markers have a minor allele frequency (MAF) less than 5%
232 markers are missing more than 10% of data
4703 markers removed
39334 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.