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Genotyping experiment 2016GBS_WBDC


Experiment Short NameMNWBDC_GBS
PlatformGBS restriction site
Data ProgramUMN Pathology (MNP)
Breeding ProgramUniversity of Minnesota - Agronomy (MN)
Processing Date7/1/2016
Software versionTASSEL5GBSv2pipeline

1688807 markers were assayed for 314 lines.

(lines and markers)


Removed by filteringRemaining
4164 markers have a minor allele frequency (MAF) less than 5%
21390 markers are missing more than 10% of data
22508 markers removed
28334 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)
Manifest (markers used)
Cluster File
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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