Contact Us


Genotyping experiment 2009BOPA1_UT_Plate6


Experiment Short NameUT_BOPA1
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUtah State (UT)
Processing Date04/22/2010
SoftwareIllumina Genome Studio
Software version2010.3

1536 markers were assayed for 96 lines.

(lines and markers)


Removed by filteringRemaining
549 markers have a minor allele frequency (MAF) less than 5%
153 markers are missing more than 10% of data
571 markers removed
965 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)Sample_Sheet_2009plate6UT.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster FileBOPA1PooledSamples2009.EGT
Raw data

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

I agree to the Data Usage Policy as specified in Toronto Statement.