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Genotyping experiment 2007BOPA1_VT_Plate1


Experiment Short NameVirgina Tech samples
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramVirginia Tech (VT)
Processing Date3/18/2008
SoftwareIllumina GenomeStudio
Software version2010.3

1536 markers were assayed for 92 lines.

(lines and markers)


Removed by filteringRemaining
642 markers have a minor allele frequency (MAF) less than 5%
96 markers are missing more than 10% of data
643 markers removed
893 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)Sample_Sheet_2007plate1VA.csv
Manifest (markers used)GS0007511-OPA.opa
Cluster File2007BOPA1_26april08.EGT

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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