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Genotyping experiment 2006BOPA2_UT_Plate6


Experiment Short NameUT_Plate6
Data ProgramUSDA-ARS Fargo, ND (NDG)
Breeding ProgramUtah State (UT)
Processing Date5/8/2009
SoftwareIllumina GenomeStudio
Software version2010.3

1536 markers were assayed for 96 lines.

(lines and markers)


Removed by filteringRemaining
724 markers have a minor allele frequency (MAF) less than 5%
124 markers are missing more than 10% of data
742 markers removed
794 markers

Maximum Missing Data: %     Minimum MAF: %    

Additional files available

Samples (germplasm lines)Sample_Sheet_2006plate6UT_OPA2.csv
Manifest (markers used)GS0010598-OPA.opa
Cluster FileBarleyCAP_BOPA2_09092008.EGT

In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3 available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement

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