Name Marker_type Synonym Synonym_type Annotation Annotation_type 1_0001 OPA SNP Name 1005-549 EST Name POPA1_0001 GrainGenes 1_0001 1005 HarvEST_U32 1_0001 264 HarvEST_U35 1_0001 Contig1489_at U32_Probe_Set 1_0001 HT06A08u_s_at U32_Probe_Set 1_0001 LOC_Os05g07700 U32_Rice_Locus 1_0001 protein 60S ribosomal protein L10-3, putative, expressed U32_Rice_Description 1_0001 Contig1489_at U35_Probe_Set 1_0001 HT06A08u_s_at U35_Probe_Set 1_0001 LOC_Os05g07700 U35_Rice_Locus 1_0001 protein 60S ribosomal protein L10-3, putative, expressed U35_Rice_Description 2_0065 OPA SNP Name 1119-1157 EST Name POPA2_0065 GrainGenes 2_0065 1119 HarvEST_U32 2_0065 14582 HarvEST_U35 2_0065 Contig1668_at U32_Probe_Set 2_0065 Contig1671_at U32_Probe_Set 2_0065 Contig1671_s_at U32_Probe_Set 2_0065 LOC_Os03g18570 U32_Rice_Locus 2_0065 protein 40S ribosomal protein S7, putative, expressed U32_Rice_Description 2_0065 Contig1668_at U35_Probe_Set 2_0065 Contig1671_at U35_Probe_Set 2_0065 LOC_Os03g18570 U35_Rice_Locus 2_0065 protein 40S ribosomal protein S7, putative, expressed U35_Rice_Description 3_0227 OPA SNP Name ABC14399_1_70 EST Name POPA3_0227 GrainGenes 3_0227 3_0227 POPA Name 11546 HarvEST_U32 3_0227 14392 HarvEST_U35 3_0227 Contig14398_s_at U32_Probe_Set 3_0227 Contig14399_at U32_Probe_Set 3_0227 LOC_Os04g02050 U32_Rice_Locus 3_0227 protein bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase 2, putative, expressed U32_Rice_Description 3_0227 Contig1437_s_at U35_Probe_Set 3_0227 Contig14398_s_at U35_Probe_Set 3_0227 Contig14399_at U35_Probe_Set 3_0227 LOC_Os04g02050 U35_Rice_Locus 3_0227 protein bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase 2, putative, expressed U35_Rice_Description 11_10090 OPA SNP Name 1375-2534 EST Name POPA1_0090 GrainGenes 11_10090 11_10090 BOPA Combined Name 1375 HarvEST_U32 11_10090 11-0133 BOPA Name 14849 HarvEST_U35 11_10090 1_0090 POPA Name Contig2034_s_at U32_Probe_Set 11_10090 EBro02_SQ006_H18_s_at U32_Probe_Set 11_10090 LOC_Os03g05730 U32_Rice_Locus 11_10090 protein cell division control protein 48 homolog E, putative, expressed U32_Rice_Description 11_10090 Contig2034_s_at U35_Probe_Set 11_10090 EBro02_SQ006_H18_s_at U35_Probe_Set 11_10090 LOC_Os03g05730 U35_Rice_Locus 11_10090 protein cell division control protein 48 homolog E, putative, expressed U35_Rice_Description --------------------- CUT -------------------------- Fields and values are tab delimited. LEGEND: Line 1 contains field designations Line 2 starts the marker data FIELD DEFINITIONS: Name - Official marker name Marker_type - A marker type name (should match one of the names in the THT marker_types table: OPA SNP Name, DArT Marker, Historical, QTL) Synonym - Other known marker names Synonym_type - type name of corresponding secondary name Annotation - an annotation value Annotation_type - type/source of the annotation information Current Synonym_type values: EST Name - Original Lab EST Name POPA Name - Name from POPA array BOPA Combined Name - New name showing tracking between POPAs and BOPAs BOPA Name - Original BOPA name DArT Name - DArT marker Historical Name - Historical SNP Name from Grain Genes Current Annotation_type values: GrainGenes - Reference name to annotation record from GrainGenes HarvEST_U32 - Unigene ID for HarvEST U32 assembly HarvEST_U35 - Unigene ID for HarvEST U35 assembly U32_Probe_Set - A reference to PLEXdb probe record U32_Rice_Locus - A reference to Gramene record U32_Rice_Description - Annotation description U35_Probe_Set - A reference to PLEXdb probe record U35_Rice_Locus - A reference to Gramene record U35_Rice_Description - Annotation description